[med-svn] [trinityrnaseq] branch master updated (ac69c09 -> 6ce1070)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch master
in repository trinityrnaseq.

      from  ac69c09   bump version, refresh patches
       new  5b74a2b   update excludes; add std gbp.conf
       new  b186ab4   Imported Upstream version 2.1.1+dfsg
       new  784057b   Merge tag 'upstream/2.1.1+dfsg'
       new  5acb91c   reorg copyright
       new  703e1b8   fix tests & restore Inchworm
       new  eee4160   build the scaffold_iworm_contigs tool
       new  5604a6e   add citation as per Trinity --cite
       new  41489bc   switch to bowtie2; disable version check
       new  6ce1070   sigh, make a TODO list

The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/TODO                                        |   4 +++
 debian/control                                     |   5 ++--
 debian/copyright                                   |  33 ++++-----------------
 debian/gbp.conf                                    |  12 ++++++++
 debian/patches/disable-version-check               |  13 ++++++++
 .../scaffold_iworm_contigs-Makefile-fix-clean      |  17 +++++++++++
 debian/patches/series                              |   2 ++
 debian/rules                                       |   2 +-
 debian/tests/run-tests                             |   4 ++-
 debian/trinityrnaseq.install                       |   2 ++
 debian/upstream/metadata                           |  27 ++++++++++-------
 trinity-plugins/htslib-1.2.1.tar.bz2               | Bin 911326 -> 0 bytes
 trinity-plugins/htslib.github.Aug182015.tar.gz     | Bin 7316027 -> 0 bytes
 trinity-plugins/samtools-0.1.19.tar.bz2            | Bin 514507 -> 0 bytes
 14 files changed, 78 insertions(+), 43 deletions(-)
 create mode 100644 debian/TODO
 create mode 100644 debian/gbp.conf
 create mode 100644 debian/patches/disable-version-check
 create mode 100644 debian/patches/scaffold_iworm_contigs-Makefile-fix-clean
 delete mode 100644 trinity-plugins/htslib-1.2.1.tar.bz2
 delete mode 100644 trinity-plugins/htslib.github.Aug182015.tar.gz
 delete mode 100644 trinity-plugins/samtools-0.1.19.tar.bz2

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trinityrnaseq.git