[med-svn] [trinityrnaseq] 05/09: fix tests & restore Inchworm

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository trinityrnaseq.

commit 703e1b868db90e7cbe279225a01914fac92ed269
Author: Michael R. Crusoe <crusoe at ucdavis.edu>
Date:   Fri Jan 15 04:38:26 2016 -0800

    fix tests & restore Inchworm
---
 debian/copyright             | 21 ---------------------
 debian/tests/run-tests       |  4 +++-
 debian/trinityrnaseq.install |  1 +
 3 files changed, 4 insertions(+), 22 deletions(-)

diff --git a/debian/copyright b/debian/copyright
index d7d8c2f..ca490ce 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -106,24 +106,3 @@ License: GPL-2+
  On Debian systems, the full text of the GNU General Public
  License version 2 can be found in the file
  `/usr/share/common-licenses/GPL-2'.
-
-License: MIT
-   Permission is hereby granted, free of charge, to any person obtaining
-   a copy of this software and associated documentation files (the
-   "Software"), to deal in the Software without restriction, including
-   without limitation the rights to use, copy, modify, merge, publish,
-   distribute, sublicense, and/or sell copies of the Software, and to
-   permit persons to whom the Software is furnished to do so, subject to
-   the following conditions:
- .
-   The above copyright notice and this permission notice shall be
-   included in all copies or substantial portions of the Software.
- .
-   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-   EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-   MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-   NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
-   BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
-   ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
-   CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-   SOFTWARE.
diff --git a/debian/tests/run-tests b/debian/tests/run-tests
index 415f2d5..b1c9b0f 100644
--- a/debian/tests/run-tests
+++ b/debian/tests/run-tests
@@ -1,4 +1,4 @@
-#!/bin/sh -e
+#!/bin/sh
 
 pkg=trinityrnaseq
 if [ "$ADTTMP" = "" ] ; then
@@ -10,5 +10,7 @@ PATH=/usr/lib/debian-med/bin/:${PATH}
 export PATH
 
 cp -rs /usr/lib/trinityrnaseq/ .
+rm trinityrnaseq/sample_data
+cp -rs /usr/share/trinityrnaseq/sample_data trinityrnaseq/
 cd trinityrnaseq/sample_data
 make
diff --git a/debian/trinityrnaseq.install b/debian/trinityrnaseq.install
index 113aa84..8bfb7b0 100644
--- a/debian/trinityrnaseq.install
+++ b/debian/trinityrnaseq.install
@@ -18,3 +18,4 @@ Chrysalis/BreakTransByPairs /usr/lib/trinityrnaseq/Chrysalis/
 Trinity /usr/lib/trinityrnaseq
 PerlLib /usr/lib/trinityrnaseq/
 util /usr/lib/trinityrnaseq/
+debian/tmp/usr/lib/trinityrnaseq/Inchworm /usr/lib/trinityrnaseq/

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trinityrnaseq.git