[med-svn] [muscle] 03/04: Imported Upstream version 3.8.31+dfsg
Andreas Tille
tille at debian.org
Mon Jan 18 16:11:31 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository muscle.
commit 0d81e9073a1b0a2d5e7a31ba929bf82150845c61
Author: Andreas Tille <tille at debian.org>
Date: Mon Jan 18 17:11:21 2016 +0100
Imported Upstream version 3.8.31+dfsg
---
muscle.vcproj | 922 -----------------------
muscle21.vcproj | 423 -----------
Makefile => src/Makefile | 0
README.txt => src/README.txt | 0
aligngivenpath.cpp => src/aligngivenpath.cpp | 0
aligngivenpathsw.cpp => src/aligngivenpathsw.cpp | 0
aligntwomsas.cpp => src/aligntwomsas.cpp | 0
aligntwoprofs.cpp => src/aligntwoprofs.cpp | 0
aln.cpp => src/aln.cpp | 0
alpha.cpp => src/alpha.cpp | 0
alpha.h => src/alpha.h | 0
anchors.cpp => src/anchors.cpp | 0
bittraceback.cpp => src/bittraceback.cpp | 0
blosum62.cpp => src/blosum62.cpp | 0
blosumla.cpp => src/blosumla.cpp | 0
clust.cpp => src/clust.cpp | 0
clust.h => src/clust.h | 0
cluster.cpp => src/cluster.cpp | 0
cluster.h => src/cluster.h | 0
clustset.h => src/clustset.h | 0
clustsetdf.h => src/clustsetdf.h | 0
clustsetmsa.h => src/clustsetmsa.h | 0
clwwt.cpp => src/clwwt.cpp | 0
color.cpp => src/color.cpp | 0
cons.cpp => src/cons.cpp | 0
diaglist.cpp => src/diaglist.cpp | 0
diaglist.h => src/diaglist.h | 0
diffobjscore.cpp => src/diffobjscore.cpp | 0
diffpaths.cpp => src/diffpaths.cpp | 0
difftrees.cpp => src/difftrees.cpp | 0
difftreese.cpp => src/difftreese.cpp | 0
distcalc.cpp => src/distcalc.cpp | 0
distcalc.h => src/distcalc.h | 0
distfunc.cpp => src/distfunc.cpp | 0
distfunc.h => src/distfunc.h | 0
distpwkimura.cpp => src/distpwkimura.cpp | 0
domuscle.cpp => src/domuscle.cpp | 0
dosp.cpp => src/dosp.cpp | 0
dpregionlist.h => src/dpregionlist.h | 0
dpreglist.cpp => src/dpreglist.cpp | 0
dpreglist.h => src/dpreglist.h | 0
drawtree.cpp => src/drawtree.cpp | 0
edgelist.cpp => src/edgelist.cpp | 0
edgelist.h => src/edgelist.h | 0
enumopts.cpp => src/enumopts.cpp | 0
enumopts.h => src/enumopts.h | 0
enums.h => src/enums.h | 0
enumtostr.cpp => src/enumtostr.cpp | 0
estring.cpp => src/estring.cpp | 0
estring.h => src/estring.h | 0
fasta.cpp => src/fasta.cpp | 0
fasta2.cpp => src/fasta2.cpp | 0
fastclust.cpp => src/fastclust.cpp | 0
fastdist.cpp => src/fastdist.cpp | 0
fastdistjones.cpp => src/fastdistjones.cpp | 0
fastdistkbit.cpp => src/fastdistkbit.cpp | 0
fastdistkmer.cpp => src/fastdistkmer.cpp | 0
fastdistmafft.cpp => src/fastdistmafft.cpp | 0
fastdistnuc.cpp => src/fastdistnuc.cpp | 0
fastscorepath2.cpp => src/fastscorepath2.cpp | 0
finddiags.cpp => src/finddiags.cpp | 0
finddiagsn.cpp => src/finddiagsn.cpp | 0
gapscoredimer.h => src/gapscoredimer.h | 0
gatest.cpp => src/gatest.cpp | 0
glbalign.cpp => src/glbalign.cpp | 0
glbalign352.cpp => src/glbalign352.cpp | 0
glbaligndiag.cpp => src/glbaligndiag.cpp | 0
glbalignla.cpp => src/glbalignla.cpp | 0
glbalignle.cpp => src/glbalignle.cpp | 0
glbalignns.cpp => src/glbalignns.cpp | 0
glbalignsimple.cpp => src/glbalignsimple.cpp | 0
glbalignsp.cpp => src/glbalignsp.cpp | 0
glbalignspn.cpp => src/glbalignspn.cpp | 0
glbalignss.cpp => src/glbalignss.cpp | 0
glbalndimer.cpp => src/glbalndimer.cpp | 0
globals.cpp => src/globals.cpp | 0
globalslinux.cpp => src/globalslinux.cpp | 0
globalsosx.cpp => src/globalsosx.cpp | 0
globalsother.cpp => src/globalsother.cpp | 0
globalswin32.cpp => src/globalswin32.cpp | 0
gonnet.cpp => src/gonnet.cpp | 0
gonnet.h => src/gonnet.h | 0
gotowt.cpp => src/gotowt.cpp | 0
henikoffweight.cpp => src/henikoffweight.cpp | 0
henikoffweightpb.cpp => src/henikoffweightpb.cpp | 0
html.cpp => src/html.cpp | 0
hydro.cpp => src/hydro.cpp | 0
intmath.cpp => src/intmath.cpp | 0
intmath.h => src/intmath.h | 0
local.cpp => src/local.cpp | 0
main.cpp => src/main.cpp | 0
make.err => src/make.err | 0
make.out => src/make.out | 0
makerootmsa.cpp => src/makerootmsa.cpp | 0
makerootmsab.cpp => src/makerootmsab.cpp | 0
maketree.cpp => src/maketree.cpp | 0
mhack.cpp => src/mhack.cpp | 0
mk => src/mk | 0
mpam200.cpp => src/mpam200.cpp | 0
msa.cpp => src/msa.cpp | 0
msa.h => src/msa.h | 0
msa2.cpp => src/msa2.cpp | 0
msadist.h => src/msadist.h | 0
msadistkimura.cpp => src/msadistkimura.cpp | 0
msadistkimura.h => src/msadistkimura.h | 0
msadistmafft.h => src/msadistmafft.h | 0
msf.cpp => src/msf.cpp | 0
muscle.cpp => src/muscle.cpp | 0
muscle.h => src/muscle.h | 0
muscleout.cpp => src/muscleout.cpp | 0
nucmx.cpp => src/nucmx.cpp | 0
nwdasimple.cpp => src/nwdasimple.cpp | 0
nwdasimple2.cpp => src/nwdasimple2.cpp | 0
nwdasmall.cpp => src/nwdasmall.cpp | 0
nwrec.cpp => src/nwrec.cpp | 0
nwsmall.cpp => src/nwsmall.cpp | 0
objscore.cpp => src/objscore.cpp | 0
objscore.h => src/objscore.h | 0
objscore2.cpp => src/objscore2.cpp | 0
objscoreda.cpp => src/objscoreda.cpp | 0
onexception.cpp => src/onexception.cpp | 0
options.cpp => src/options.cpp | 0
outweights.cpp => src/outweights.cpp | 0
pam200mafft.cpp => src/pam200mafft.cpp | 0
params.cpp => src/params.cpp | 0
params.h => src/params.h | 0
phy.cpp => src/phy.cpp | 0
phy2.cpp => src/phy2.cpp | 0
phy3.cpp => src/phy3.cpp | 0
phy4.cpp => src/phy4.cpp | 0
phyfromclust.cpp => src/phyfromclust.cpp | 0
phyfromfile.cpp => src/phyfromfile.cpp | 0
physeq.cpp => src/physeq.cpp | 0
phytofile.cpp => src/phytofile.cpp | 0
posgap.cpp => src/posgap.cpp | 0
ppscore.cpp => src/ppscore.cpp | 0
profdb.cpp => src/profdb.cpp | 0
profile.cpp => src/profile.cpp | 0
profile.h => src/profile.h | 0
profilefrommsa.cpp => src/profilefrommsa.cpp | 0
progalign.cpp => src/progalign.cpp | 0
progress.cpp => src/progress.cpp | 0
progressivealign.cpp => src/progressivealign.cpp | 0
pwpath.cpp => src/pwpath.cpp | 0
pwpath.h => src/pwpath.h | 0
readmx.cpp => src/readmx.cpp | 0
realigndiffs.cpp => src/realigndiffs.cpp | 0
realigndiffse.cpp => src/realigndiffse.cpp | 0
redblack.cpp => src/redblack.cpp | 0
refine.cpp => src/refine.cpp | 0
refinehoriz.cpp => src/refinehoriz.cpp | 0
refinesubfams.cpp => src/refinesubfams.cpp | 0
refinetree.cpp => src/refinetree.cpp | 0
refinetreee.cpp => src/refinetreee.cpp | 0
refinevert.cpp => src/refinevert.cpp | 0
refinew.cpp => src/refinew.cpp | 0
releases.txt => src/releases.txt | 0
savebest.cpp => src/savebest.cpp | 0
scoredist.cpp => src/scoredist.cpp | 0
scoregaps.cpp => src/scoregaps.cpp | 0
scorehistory.cpp => src/scorehistory.cpp | 0
scorehistory.h => src/scorehistory.h | 0
scoremx.cpp => src/scoremx.cpp | 0
scorepp.cpp => src/scorepp.cpp | 0
seq.cpp => src/seq.cpp | 0
seq.h => src/seq.h | 0
seqvect.cpp => src/seqvect.cpp | 0
seqvect.h => src/seqvect.h | 0
setblosumweights.cpp => src/setblosumweights.cpp | 0
setgscweights.cpp => src/setgscweights.cpp | 0
setnewhandler.cpp => src/setnewhandler.cpp | 0
spfast.cpp => src/spfast.cpp | 0
sptest.cpp => src/sptest.cpp | 0
stabilize.cpp => src/stabilize.cpp | 0
subfam.cpp => src/subfam.cpp | 0
subfams.cpp => src/subfams.cpp | 0
svnmods.h => src/svnmods.h | 0
svnversion.h => src/svnversion.h | 0
sw.cpp => src/sw.cpp | 0
termgaps.cpp => src/termgaps.cpp | 0
textfile.cpp => src/textfile.cpp | 0
textfile.h => src/textfile.h | 0
threewaywt.cpp => src/threewaywt.cpp | 0
timing.h => src/timing.h | 0
tomhydro.cpp => src/tomhydro.cpp | 0
traceback.cpp => src/traceback.cpp | 0
tracebackopt.cpp => src/tracebackopt.cpp | 0
tracebacksw.cpp => src/tracebacksw.cpp | 0
tree.h => src/tree.h | 0
treefrommsa.cpp => src/treefrommsa.cpp | 0
types.h => src/types.h | 0
typetostr.cpp => src/typetostr.cpp | 0
unixio.h => src/unixio.h | 0
upgma2.cpp => src/upgma2.cpp | 0
usage.cpp => src/usage.cpp | 0
validateids.cpp => src/validateids.cpp | 0
version.txt => src/version.txt | 0
vtml2.cpp => src/vtml2.cpp | 0
writescorefile.cpp => src/writescorefile.cpp | 0
199 files changed, 1345 deletions(-)
diff --git a/muscle.vcproj b/muscle.vcproj
deleted file mode 100644
index 226dac2..0000000
--- a/muscle.vcproj
+++ /dev/null
@@ -1,922 +0,0 @@
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-<VisualStudioProject
- ProjectType="Visual C++"
- Version="9.00"
- Name="muscle"
- ProjectGUID="{57FBAB99-B961-4B38-B846-CA26D63384F2}"
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