[med-svn] [microbiomeutil] 01/01: Fix output in test suite

[Andreas Tille]

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tille pushed a commit to branch master
in repository microbiomeutil.

commit e84fce242110883f13e24391fefc9c209efe5386
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jan 20 16:06:02 2016 +0100

    Fix output in test suite
---
 debian/patches/enable_tests_in_local_dir.patch | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/debian/patches/enable_tests_in_local_dir.patch b/debian/patches/enable_tests_in_local_dir.patch
index a561905..354a1bb 100644
--- a/debian/patches/enable_tests_in_local_dir.patch
+++ b/debian/patches/enable_tests_in_local_dir.patch
@@ -135,3 +135,14 @@ Description: To run build time tests enable running the scripts
  	while (my $seq_obj = $fasta_reader->next()) {
  		my $acc = $seq_obj->get_accession;
  		
+--- a/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl
++++ b/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl
+@@ -655,7 +655,7 @@ sub report_alignment_trace {
+ 			}
+ 			
+ 			#print(  (" " x 26) . join ("", @$error_profile_aref) . "\n");
+-			printf("%-25s $align_region\n", substr("$alignment_counter $acc", 0, 25), $align_region);
++			printf("%-25s $align_region\n", substr("$alignment_counter $acc", 0, 25));
+ 		}
+ 		
+ 		print "\n";

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