[med-svn] [gmap] branch master updated (a403449 -> 5b67b48)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository gmap.

      from  a403449   d/README.Debian: fix typo
       new  235299e   Imported Upstream version 2015-12-31.v4
       new  c2fe953   Merge tag 'upstream/2015-12-31.v4'
       new  0378278   d/changelog: new upstream version
       new  d5a9178   d/filter.pl: remove default variable
       new  4c2cdb8   d/changelog: upload to unstable
       new  8a52352   Imported Upstream version 2015-12-31.v5
       new  d11c38d   Merge tag 'upstream/2015-12-31.v5'
       new  c6e7fbb   d/changelog: imported new upstream version, upload to unstable
       new  ee3f4ff   d/README.Debian: update
       new  8a67df8   Imported Upstream version 2015-12-31.v6
       new  9e1cd04   Merge tag 'upstream/2015-12-31.v6'
       new  5b67b48   d/changelog: new upstream version, upload to unstable

The 12 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog            |  55 ++++++++++++++++
 VERSION              |   2 +-
 configure            |  24 +++----
 debian/README.Debian |   5 --
 debian/changelog     |  20 ++++++
 debian/filter.pl     |  41 ++++++------
 src/dynprog_genome.c |  58 ++++++++++-------
 src/dynprog_single.c |   3 +-
 src/gsnap.c          |   4 +-
 src/output.c         |   8 +--
 src/samprint.c       | 180 ++++++++++++++++++++++++++++++++-------------------
 src/samprint.h       |   4 +-
 src/sarray-read.c    |  38 +++++++----
 src/sarray-read.h    |   4 +-
 src/stage1hr.c       |  57 ++++++++++------
 src/stage3hr.c       | 123 ++++++++++++++++++++++++++---------
 src/substring.c      |   2 +-
 17 files changed, 429 insertions(+), 199 deletions(-)

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