[med-svn] [gmap] 02/12: Merge tag 'upstream/2015-12-31.v4'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository gmap.

commit c2fe9531fa8d732d4fc6e768781b371cc129a343
Merge: a403449 235299e
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Fri Jan 15 09:43:26 2016 +0100

    Merge tag 'upstream/2015-12-31.v4'
    
    Upstream version 2015-12-31.v4

 ChangeLog            |  46 +++++++++++++
 VERSION              |   2 +-
 configure            |  24 +++----
 src/dynprog_genome.c |  87 ++++++++++++++++---------
 src/dynprog_single.c |   3 +-
 src/gsnap.c          |   4 +-
 src/output.c         |   8 +--
 src/samprint.c       | 180 ++++++++++++++++++++++++++++++++-------------------
 src/samprint.h       |   4 +-
 src/sarray-read.c    |  38 +++++++----
 src/sarray-read.h    |   4 +-
 src/stage1hr.c       |  57 ++++++++++------
 src/stage3hr.c       | 123 ++++++++++++++++++++++++++---------
 src/substring.c      |   2 +-
 14 files changed, 403 insertions(+), 179 deletions(-)

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