[med-svn] [htslib] 02/04: update symbols file
Sascha Steinbiss
sascha at steinbiss.name
Sat Jan 30 14:37:46 UTC 2016
This is an automated email from the git hooks/post-receive script.
sascha-guest pushed a commit to branch debian/unstable
in repository htslib.
commit 6cd8493c1fe0330cc448feed2ae877dec70676c3
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date: Sat Jan 30 11:58:40 2016 +0000
update symbols file
---
debian/libhts1.symbols | 97 +++++++++++++++++++++++++++++++++++++++++++-------
1 file changed, 85 insertions(+), 12 deletions(-)
diff --git a/debian/libhts1.symbols b/debian/libhts1.symbols
index 385db3b..2cf4449 100644
--- a/debian/libhts1.symbols
+++ b/debian/libhts1.symbols
@@ -1,7 +1,4 @@
libhts.so.1 libhts1 #MINVER#
- MD5_Final at Base 1.0
- MD5_Init at Base 1.0
- MD5_Update at Base 1.0
_reader_next_line at Base 1.0
_regidx_build_index at Base 1.2.1
_vcf_parse_format at Base 1.0
@@ -46,12 +43,13 @@ libhts.so.1 libhts1 #MINVER#
bam_str2flag at Base 1.0
bam_write1 at Base 1.0
bcf_add_filter at Base 1.0
+ bcf_add_id at Base 1.3
bcf_calc_ac at Base 1.0
bcf_clear at Base 1.0
bcf_copy at Base 1.2.1
bcf_destroy at Base 1.0
bcf_dup at Base 1.0
- bcf_empty1 at Base 1.0
+ bcf_empty at Base 1.3
bcf_enc_vchar at Base 1.0
bcf_enc_vfloat at Base 1.0
bcf_enc_vint at Base 1.0
@@ -82,6 +80,7 @@ libhts.so.1 libhts1 #MINVER#
bcf_hdr_get_version at Base 1.0
bcf_hdr_id2int at Base 1.0
bcf_hdr_init at Base 1.0
+ bcf_hdr_merge at Base 1.3
bcf_hdr_parse at Base 1.0
bcf_hdr_parse_line at Base 1.0
bcf_hdr_parse_sample_line at Base 1.0
@@ -105,11 +104,14 @@ libhts.so.1 libhts1 #MINVER#
bcf_hrec_format at Base 1.0
bcf_hrec_set_val at Base 1.0
bcf_index at Base 1.0
+ bcf_index_build2 at Base 1.3
bcf_index_build at Base 1.0
+ bcf_index_load2 at Base 1.3
bcf_init at Base 1.0
bcf_is_snp at Base 1.0
bcf_read at Base 1.0
bcf_readrec at Base 1.0
+ bcf_remove_allele_set at Base 1.3
bcf_remove_alleles at Base 1.0
bcf_remove_filter at Base 1.0
bcf_sr_add_reader at Base 1.0
@@ -149,6 +151,7 @@ libhts.so.1 libhts1 #MINVER#
bcf_write at Base 1.0
bgzf_check_EOF at Base 1.0
bgzf_close at Base 1.0
+ bgzf_compress at Base 1.3
bgzf_dopen at Base 1.0
bgzf_flush at Base 1.0
bgzf_flush_try at Base 1.0
@@ -181,7 +184,27 @@ libhts.so.1 libhts1 #MINVER#
cram_beta_encode_init at Base 1.0
cram_beta_encode_int at Base 1.0
cram_beta_encode_store at Base 1.0
+ cram_block_append at Base 1.3
+ cram_block_compression_hdr_decoder2encoder at Base 1.3
+ cram_block_compression_hdr_set_rg at Base 1.3
+ cram_block_get_comp_size at Base 1.3
+ cram_block_get_content_id at Base 1.3
+ cram_block_get_content_type at Base 1.3
+ cram_block_get_crc32 at Base 1.3
+ cram_block_get_data at Base 1.3
+ cram_block_get_offset at Base 1.3
+ cram_block_get_size at Base 1.3
+ cram_block_get_uncomp_size at Base 1.3
cram_block_method2str at Base 1.0
+ cram_block_set_comp_size at Base 1.3
+ cram_block_set_content_id at Base 1.3
+ cram_block_set_crc32 at Base 1.3
+ cram_block_set_data at Base 1.3
+ cram_block_set_offset at Base 1.3
+ cram_block_set_size at Base 1.3
+ cram_block_set_uncomp_size at Base 1.3
+ cram_block_size at Base 1.3
+ cram_block_update_size at Base 1.3
cram_byte_array_len_decode at Base 1.0
cram_byte_array_len_decode_free at Base 1.0
cram_byte_array_len_decode_init at Base 1.0
@@ -190,7 +213,6 @@ libhts.so.1 libhts1 #MINVER#
cram_byte_array_len_encode_init at Base 1.0
cram_byte_array_len_encode_store at Base 1.0
cram_byte_array_stop_decode_block at Base 1.0
-#MISSING: 1.2.1# cram_byte_array_stop_decode_char at Base 1.0
cram_byte_array_stop_decode_free at Base 1.0
cram_byte_array_stop_decode_init at Base 1.0
cram_byte_array_stop_encode at Base 1.0
@@ -198,11 +220,22 @@ libhts.so.1 libhts1 #MINVER#
cram_byte_array_stop_encode_init at Base 1.0
cram_byte_array_stop_encode_store at Base 1.0
cram_close at Base 1.0
+ cram_codec_decoder2encoder at Base 1.3
cram_codec_to_id at Base 1.2.1
cram_compress_block at Base 1.0
+ cram_container_get_landmarks at Base 1.3
+ cram_container_get_length at Base 1.3
+ cram_container_get_num_blocks at Base 1.3
+ cram_container_is_empty at Base 1.3
+ cram_container_set_landmarks at Base 1.3
+ cram_container_set_length at Base 1.3
+ cram_container_set_num_blocks at Base 1.3
+ cram_container_size at Base 1.3
cram_content_type2str at Base 1.0
+ cram_copy_slice at Base 1.3
cram_decode_TD at Base 1.0
cram_decode_compression_header at Base 1.0
+ cram_decode_estimate_sizes at Base 1.3
cram_decode_slice at Base 1.0
cram_decode_slice_header at Base 1.0
cram_decode_slice_mt at Base 1.0
@@ -216,17 +249,21 @@ libhts.so.1 libhts1 #MINVER#
cram_encoder_init at Base 1.0
cram_encoding2str at Base 1.0
cram_eof at Base 1.0
-#MISSING: 1.2.1# cram_external_decode_block at Base 1.0
cram_external_decode_char at Base 1.0
cram_external_decode_free at Base 1.0
cram_external_decode_init at Base 1.0
cram_external_decode_int at Base 1.0
-#MISSING: 1.2.1# cram_external_encode at Base 1.0
cram_external_encode_char at Base 1.2.1
cram_external_encode_free at Base 1.0
cram_external_encode_init at Base 1.0
cram_external_encode_int at Base 1.2.1
cram_external_encode_store at Base 1.0
+ cram_fd_get_fp at Base 1.3
+ cram_fd_get_header at Base 1.3
+ cram_fd_get_version at Base 1.3
+ cram_fd_set_fp at Base 1.3
+ cram_fd_set_header at Base 1.3
+ cram_fd_set_version at Base 1.3
cram_flush at Base 1.0
cram_flush_container at Base 1.0
cram_flush_container_mt at Base 1.0
@@ -250,6 +287,7 @@ libhts.so.1 libhts1 #MINVER#
cram_huffman_decode_init at Base 1.0
cram_huffman_decode_int0 at Base 1.0
cram_huffman_decode_int at Base 1.0
+ cram_huffman_decode_null at Base 1.3
cram_huffman_encode_char0 at Base 1.0
cram_huffman_encode_char at Base 1.0
cram_huffman_encode_free at Base 1.0
@@ -262,6 +300,8 @@ libhts.so.1 libhts1 #MINVER#
cram_index_load at Base 1.0
cram_index_query at Base 1.0
cram_load_reference at Base 1.0
+ cram_major_vers at Base 1.3
+ cram_minor_vers at Base 1.3
cram_new_block at Base 1.0
cram_new_compression_header at Base 1.0
cram_new_container at Base 1.0
@@ -282,15 +322,18 @@ libhts.so.1 libhts1 #MINVER#
cram_set_header at Base 1.0
cram_set_option at Base 1.0
cram_set_voption at Base 1.0
+ cram_slice_hdr_get_num_blocks at Base 1.3
cram_stats_add at Base 1.0
cram_stats_create at Base 1.0
cram_stats_del at Base 1.0
cram_stats_dump at Base 1.0
cram_stats_encoding at Base 1.0
cram_stats_free at Base 1.0
+ cram_store_container at Base 1.3
cram_subexp_decode at Base 1.0
cram_subexp_decode_free at Base 1.0
cram_subexp_decode_init at Base 1.0
+ cram_transcode_rg at Base 1.3
cram_uncompress_block at Base 1.0
cram_write_SAM_hdr at Base 1.0
cram_write_block at Base 1.0
@@ -298,7 +341,6 @@ libhts.so.1 libhts1 #MINVER#
cram_write_file_def at Base 1.0
debug_buffer at Base 1.0
debug_buffers at Base 1.0
-#MISSING: 1.2.1# download_and_open at Base 1.0
expand_cache_path at Base 1.0
fai_build at Base 1.0
fai_build_core at Base 1.0
@@ -316,13 +358,18 @@ libhts.so.1 libhts1 #MINVER#
file_exists at Base 1.0
file_size at Base 1.0
find_file_url at Base 1.0
+ find_path at Base 1.3
flen at Base 1.0
hclose at Base 1.0
hclose_abruptly at Base 1.0
hdopen at Base 1.0
+ hfile_add_scheme_handler at Base 1.3
+ hfile_always_local at Base 1.3
+ hfile_always_remote at Base 1.3
hfile_destroy at Base 1.0
hfile_init at Base 1.0
hfile_oflags at Base 1.0
+ hfile_plugin_init_net at Base 1.3
hflush at Base 1.0
hgetc2 at Base 1.0
hisremote at Base 1.2.1
@@ -338,6 +385,7 @@ libhts.so.1 libhts1 #MINVER#
hts_detect_format at Base 1.2.1
hts_file_type at Base 1.0
hts_format_description at Base 1.2.1
+ hts_format_file_extension at Base 1.3
hts_get_bgzfp at Base 1.0
hts_get_format at Base 1.2.1
hts_getline at Base 1.0
@@ -349,17 +397,31 @@ libhts.so.1 libhts1 #MINVER#
hts_idx_get_stat at Base 1.0
hts_idx_getfn at Base 1.0
hts_idx_init at Base 1.0
+ hts_idx_load2 at Base 1.3
hts_idx_load at Base 1.0
- hts_idx_load_local at Base 1.0
hts_idx_push at Base 1.0
hts_idx_save at Base 1.0
+ hts_idx_save_as at Base 1.3
hts_idx_seqnames at Base 1.0
hts_idx_set_meta at Base 1.0
hts_itr_destroy at Base 1.0
hts_itr_next at Base 1.0
hts_itr_query at Base 1.0
hts_itr_querys at Base 1.0
+ hts_md5_destroy at Base 1.3
+ hts_md5_final at Base 1.3
+ hts_md5_hex at Base 1.3
+ hts_md5_init at Base 1.3
+ hts_md5_reset at Base 1.3
+ hts_md5_update at Base 1.3
hts_open at Base 1.0
+ hts_open_format at Base 1.3
+ hts_opt_add at Base 1.3
+ hts_opt_apply at Base 1.3
+ hts_opt_free at Base 1.3
+ hts_parse_decimal at Base 1.3
+ hts_parse_format at Base 1.3
+ hts_parse_opt_list at Base 1.3
hts_parse_reg at Base 1.0
hts_readlines at Base 1.0
hts_readlist at Base 1.0
@@ -373,11 +435,13 @@ libhts.so.1 libhts1 #MINVER#
hwrite2 at Base 1.0
int32_decode at Base 1.0
int32_encode at Base 1.0
- int32_get at Base 1.0
- int32_put at Base 1.0
+ int32_get_blk at Base 1.3
+ int32_put_blk at Base 1.3
is_directory at Base 1.0
is_file at Base 1.0
+ itf8_bytes at Base 1.3
itf8_decode at Base 1.0
+ itf8_decode_crc at Base 1.3
itf8_encode at Base 1.0
itf8_put_blk at Base 1.0
kf_betai at Base 1.0
@@ -389,6 +453,7 @@ libhts.so.1 libhts1 #MINVER#
kftp_connect_file at Base 1.0
kftp_parse_url at Base 1.0
kftp_reconnect at Base 1.0
+ kgetline at Base 1.3
kh_clear_s2i at Base 1.0
kh_del_s2i at Base 1.0
kh_destroy_s2i at Base 1.0
@@ -423,6 +488,7 @@ libhts.so.1 libhts1 #MINVER#
kt_fisher_exact at Base 1.0
kvsprintf at Base 1.0
ltf8_decode at Base 1.0
+ ltf8_decode_crc at Base 1.3
ltf8_get at Base 1.0
ltf8_put at Base 1.0
mfascii at Base 1.0
@@ -496,14 +562,19 @@ libhts.so.1 libhts1 #MINVER#
sam_hdr_parse_ at Base 1.0
sam_hdr_read at Base 1.0
sam_hdr_rebuild at Base 1.0
+ sam_hdr_sort_order at Base 1.3
sam_hdr_str at Base 1.0
sam_hdr_update at Base 1.0
sam_hdr_vadd at Base 1.0
sam_hdr_write at Base 1.0
+ sam_index_build2 at Base 1.3
+ sam_index_build at Base 1.3
+ sam_index_load2 at Base 1.3
sam_index_load at Base 1.0
sam_itr_queryi at Base 1.0
sam_itr_querys at Base 1.0
sam_open_mode at Base 1.0
+ sam_open_mode_opts at Base 1.3
sam_parse1 at Base 1.0
sam_read1 at Base 1.0
sam_write1 at Base 1.0
@@ -536,7 +607,9 @@ libhts.so.1 libhts1 #MINVER#
tbx_conf_vcf at Base 1.0
tbx_destroy at Base 1.0
tbx_index at Base 1.0
+ tbx_index_build2 at Base 1.3
tbx_index_build at Base 1.0
+ tbx_index_load2 at Base 1.3
tbx_index_load at Base 1.0
tbx_name2id at Base 1.0
tbx_parse1 at Base 1.0
@@ -560,4 +633,4 @@ libhts.so.1 libhts1 #MINVER#
zfputs at Base 1.0
zfseeko at Base 1.0
zftello at Base 1.0
- zlib_mem_inflate at Base 1.0
+ zlib_mem_inflate at Base 1.0
\ No newline at end of file
--
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