[med-svn] [salmon] branch upstream updated (b6b142a -> 65579ce)
Michael Crusoe
misterc-guest at moszumanska.debian.org
Sat Jan 30 16:18:49 UTC 2016
This is an automated email from the git hooks/post-receive script.
misterc-guest pushed a change to branch upstream
in repository salmon.
from b6b142a Imported Upstream version 0.4.2+ds1
new 65579ce Imported Upstream version 0.4.2+ds1
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
cmake/Modules/FindTBB.cmake | 282 ---
include/eigen3/Eigen/Array | 11 -
include/eigen3/Eigen/Cholesky | 32 -
include/eigen3/Eigen/CholmodSupport | 45 -
include/eigen3/Eigen/Core | 376 ----
include/eigen3/Eigen/Dense | 7 -
include/eigen3/Eigen/Eigen | 2 -
include/eigen3/Eigen/Eigen2Support | 95 -
include/eigen3/Eigen/Eigenvalues | 48 -
include/eigen3/Eigen/Geometry | 63 -
include/eigen3/Eigen/Householder | 23 -
include/eigen3/Eigen/IterativeLinearSolvers | 40 -
include/eigen3/Eigen/Jacobi | 26 -
include/eigen3/Eigen/LU | 41 -
include/eigen3/Eigen/LeastSquares | 32 -
include/eigen3/Eigen/MetisSupport | 28 -
include/eigen3/Eigen/OrderingMethods | 66 -
include/eigen3/Eigen/PaStiXSupport | 46 -
include/eigen3/Eigen/PardisoSupport | 30 -
include/eigen3/Eigen/QR | 45 -
include/eigen3/Eigen/QtAlignedMalloc | 34 -
include/eigen3/Eigen/SPQRSupport | 29 -
include/eigen3/Eigen/SVD | 37 -
include/eigen3/Eigen/Sparse | 27 -
include/eigen3/Eigen/SparseCholesky | 47 -
include/eigen3/Eigen/SparseCore | 64 -
include/eigen3/Eigen/SparseLU | 49 -
include/eigen3/Eigen/SparseQR | 33 -
include/eigen3/Eigen/StdDeque | 27 -
include/eigen3/Eigen/StdList | 26 -
include/eigen3/Eigen/StdVector | 27 -
include/eigen3/Eigen/SuperLUSupport | 59 -
include/eigen3/Eigen/UmfPackSupport | 36 -
include/eigen3/Eigen/src/Cholesky/LDLT.h | 604 -------
include/eigen3/Eigen/src/Cholesky/LLT.h | 490 ------
include/eigen3/Eigen/src/Cholesky/LLT_MKL.h | 102 --
.../Eigen/src/CholmodSupport/CholmodSupport.h | 607 -------
include/eigen3/Eigen/src/Core/Array.h | 308 ----
include/eigen3/Eigen/src/Core/ArrayBase.h | 228 ---
include/eigen3/Eigen/src/Core/ArrayWrapper.h | 264 ---
include/eigen3/Eigen/src/Core/Assign.h | 583 ------
include/eigen3/Eigen/src/Core/Assign_MKL.h | 224 ---
include/eigen3/Eigen/src/Core/BandMatrix.h | 334 ----
include/eigen3/Eigen/src/Core/Block.h | 405 -----
include/eigen3/Eigen/src/Core/BooleanRedux.h | 154 --
include/eigen3/Eigen/src/Core/CommaInitializer.h | 154 --
include/eigen3/Eigen/src/Core/CoreIterators.h | 61 -
include/eigen3/Eigen/src/Core/CwiseBinaryOp.h | 229 ---
include/eigen3/Eigen/src/Core/CwiseNullaryOp.h | 864 ---------
include/eigen3/Eigen/src/Core/CwiseUnaryOp.h | 126 --
include/eigen3/Eigen/src/Core/CwiseUnaryView.h | 139 --
include/eigen3/Eigen/src/Core/DenseBase.h | 523 ------
include/eigen3/Eigen/src/Core/DenseCoeffsBase.h | 754 --------
include/eigen3/Eigen/src/Core/DenseStorage.h | 339 ----
include/eigen3/Eigen/src/Core/Diagonal.h | 237 ---
include/eigen3/Eigen/src/Core/DiagonalMatrix.h | 313 ----
include/eigen3/Eigen/src/Core/DiagonalProduct.h | 130 --
include/eigen3/Eigen/src/Core/Dot.h | 263 ---
include/eigen3/Eigen/src/Core/EigenBase.h | 131 --
include/eigen3/Eigen/src/Core/Flagged.h | 140 --
include/eigen3/Eigen/src/Core/ForceAlignedAccess.h | 146 --
include/eigen3/Eigen/src/Core/Functors.h | 985 -----------
include/eigen3/Eigen/src/Core/Fuzzy.h | 150 --
include/eigen3/Eigen/src/Core/GeneralProduct.h | 635 -------
include/eigen3/Eigen/src/Core/GenericPacketMath.h | 350 ----
include/eigen3/Eigen/src/Core/GlobalFunctions.h | 92 -
include/eigen3/Eigen/src/Core/IO.h | 250 ---
include/eigen3/Eigen/src/Core/Map.h | 192 --
include/eigen3/Eigen/src/Core/MapBase.h | 247 ---
include/eigen3/Eigen/src/Core/MathFunctions.h | 768 --------
include/eigen3/Eigen/src/Core/Matrix.h | 405 -----
include/eigen3/Eigen/src/Core/MatrixBase.h | 556 ------
include/eigen3/Eigen/src/Core/NestByValue.h | 111 --
include/eigen3/Eigen/src/Core/NoAlias.h | 134 --
include/eigen3/Eigen/src/Core/NumTraits.h | 150 --
include/eigen3/Eigen/src/Core/PermutationMatrix.h | 692 --------
include/eigen3/Eigen/src/Core/PlainObjectBase.h | 790 ---------
include/eigen3/Eigen/src/Core/ProductBase.h | 290 ---
include/eigen3/Eigen/src/Core/Random.h | 152 --
include/eigen3/Eigen/src/Core/Redux.h | 408 -----
include/eigen3/Eigen/src/Core/Ref.h | 263 ---
include/eigen3/Eigen/src/Core/Replicate.h | 177 --
include/eigen3/Eigen/src/Core/ReturnByValue.h | 88 -
include/eigen3/Eigen/src/Core/Reverse.h | 224 ---
include/eigen3/Eigen/src/Core/Select.h | 162 --
include/eigen3/Eigen/src/Core/SelfAdjointView.h | 314 ----
include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h | 197 ---
include/eigen3/Eigen/src/Core/SolveTriangular.h | 260 ---
include/eigen3/Eigen/src/Core/StableNorm.h | 203 ---
include/eigen3/Eigen/src/Core/Stride.h | 108 --
include/eigen3/Eigen/src/Core/Swap.h | 126 --
include/eigen3/Eigen/src/Core/Transpose.h | 419 -----
include/eigen3/Eigen/src/Core/Transpositions.h | 436 -----
include/eigen3/Eigen/src/Core/TriangularMatrix.h | 839 ---------
include/eigen3/Eigen/src/Core/VectorBlock.h | 95 -
include/eigen3/Eigen/src/Core/VectorwiseOp.h | 642 -------
include/eigen3/Eigen/src/Core/Visitor.h | 237 ---
.../eigen3/Eigen/src/Core/arch/AltiVec/Complex.h | 217 ---
.../Eigen/src/Core/arch/AltiVec/PacketMath.h | 501 ------
.../eigen3/Eigen/src/Core/arch/Default/Settings.h | 49 -
include/eigen3/Eigen/src/Core/arch/NEON/Complex.h | 253 ---
.../eigen3/Eigen/src/Core/arch/NEON/PacketMath.h | 419 -----
include/eigen3/Eigen/src/Core/arch/SSE/Complex.h | 442 -----
.../eigen3/Eigen/src/Core/arch/SSE/MathFunctions.h | 475 -----
.../eigen3/Eigen/src/Core/arch/SSE/PacketMath.h | 649 -------
.../Eigen/src/Core/products/CoeffBasedProduct.h | 439 -----
.../src/Core/products/GeneralBlockPanelKernel.h | 1341 --------------
.../Eigen/src/Core/products/GeneralMatrixMatrix.h | 427 -----
.../Core/products/GeneralMatrixMatrixTriangular.h | 278 ---
.../products/GeneralMatrixMatrixTriangular_MKL.h | 146 --
.../src/Core/products/GeneralMatrixMatrix_MKL.h | 118 --
.../Eigen/src/Core/products/GeneralMatrixVector.h | 566 ------
.../src/Core/products/GeneralMatrixVector_MKL.h | 131 --
.../eigen3/Eigen/src/Core/products/Parallelizer.h | 159 --
.../src/Core/products/SelfadjointMatrixMatrix.h | 436 -----
.../Core/products/SelfadjointMatrixMatrix_MKL.h | 295 ----
.../src/Core/products/SelfadjointMatrixVector.h | 281 ---
.../Core/products/SelfadjointMatrixVector_MKL.h | 114 --
.../Eigen/src/Core/products/SelfadjointProduct.h | 123 --
.../src/Core/products/SelfadjointRank2Update.h | 93 -
.../src/Core/products/TriangularMatrixMatrix.h | 427 -----
.../src/Core/products/TriangularMatrixMatrix_MKL.h | 309 ----
.../src/Core/products/TriangularMatrixVector.h | 348 ----
.../src/Core/products/TriangularMatrixVector_MKL.h | 247 ---
.../src/Core/products/TriangularSolverMatrix.h | 329 ----
.../src/Core/products/TriangularSolverMatrix_MKL.h | 155 --
.../src/Core/products/TriangularSolverVector.h | 139 --
include/eigen3/Eigen/src/Core/util/BlasUtil.h | 264 ---
include/eigen3/Eigen/src/Core/util/Constants.h | 438 -----
.../Eigen/src/Core/util/DisableStupidWarnings.h | 40 -
.../Eigen/src/Core/util/ForwardDeclarations.h | 299 ----
include/eigen3/Eigen/src/Core/util/MKL_support.h | 126 --
include/eigen3/Eigen/src/Core/util/Macros.h | 431 -----
include/eigen3/Eigen/src/Core/util/Memory.h | 977 -----------
include/eigen3/Eigen/src/Core/util/Meta.h | 243 ---
include/eigen3/Eigen/src/Core/util/NonMPL2.h | 3 -
.../Eigen/src/Core/util/ReenableStupidWarnings.h | 14 -
include/eigen3/Eigen/src/Core/util/StaticAssert.h | 208 ---
include/eigen3/Eigen/src/Core/util/XprHelper.h | 469 -----
include/eigen3/Eigen/src/Eigen2Support/Block.h | 126 --
include/eigen3/Eigen/src/Eigen2Support/Cwise.h | 192 --
.../Eigen/src/Eigen2Support/CwiseOperators.h | 298 ----
.../Eigen/src/Eigen2Support/Geometry/AlignedBox.h | 159 --
.../eigen3/Eigen/src/Eigen2Support/Geometry/All.h | 115 --
.../Eigen/src/Eigen2Support/Geometry/AngleAxis.h | 214 ---
.../Eigen/src/Eigen2Support/Geometry/Hyperplane.h | 254 ---
.../src/Eigen2Support/Geometry/ParametrizedLine.h | 141 --
.../Eigen/src/Eigen2Support/Geometry/Quaternion.h | 495 ------
.../Eigen/src/Eigen2Support/Geometry/Rotation2D.h | 145 --
.../src/Eigen2Support/Geometry/RotationBase.h | 123 --
.../Eigen/src/Eigen2Support/Geometry/Scaling.h | 167 --
.../Eigen/src/Eigen2Support/Geometry/Transform.h | 786 ---------
.../Eigen/src/Eigen2Support/Geometry/Translation.h | 184 --
include/eigen3/Eigen/src/Eigen2Support/LU.h | 120 --
include/eigen3/Eigen/src/Eigen2Support/Lazy.h | 71 -
.../eigen3/Eigen/src/Eigen2Support/LeastSquares.h | 169 --
include/eigen3/Eigen/src/Eigen2Support/Macros.h | 20 -
.../eigen3/Eigen/src/Eigen2Support/MathFunctions.h | 57 -
include/eigen3/Eigen/src/Eigen2Support/Memory.h | 45 -
include/eigen3/Eigen/src/Eigen2Support/Meta.h | 75 -
include/eigen3/Eigen/src/Eigen2Support/Minor.h | 117 --
include/eigen3/Eigen/src/Eigen2Support/QR.h | 67 -
include/eigen3/Eigen/src/Eigen2Support/SVD.h | 637 -------
.../Eigen/src/Eigen2Support/TriangularSolver.h | 42 -
.../eigen3/Eigen/src/Eigen2Support/VectorBlock.h | 94 -
.../Eigen/src/Eigenvalues/ComplexEigenSolver.h | 333 ----
.../eigen3/Eigen/src/Eigenvalues/ComplexSchur.h | 456 -----
.../Eigen/src/Eigenvalues/ComplexSchur_MKL.h | 94 -
include/eigen3/Eigen/src/Eigenvalues/EigenSolver.h | 598 -------
.../Eigen/src/Eigenvalues/GeneralizedEigenSolver.h | 341 ----
.../GeneralizedSelfAdjointEigenSolver.h | 227 ---
.../src/Eigenvalues/HessenbergDecomposition.h | 373 ----
.../Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | 160 --
include/eigen3/Eigen/src/Eigenvalues/RealQZ.h | 624 -------
include/eigen3/Eigen/src/Eigenvalues/RealSchur.h | 529 ------
.../eigen3/Eigen/src/Eigenvalues/RealSchur_MKL.h | 83 -
.../Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | 812 ---------
.../src/Eigenvalues/SelfAdjointEigenSolver_MKL.h | 92 -
.../Eigen/src/Eigenvalues/Tridiagonalization.h | 557 ------
include/eigen3/Eigen/src/Geometry/AlignedBox.h | 375 ----
include/eigen3/Eigen/src/Geometry/AngleAxis.h | 233 ---
include/eigen3/Eigen/src/Geometry/EulerAngles.h | 104 --
include/eigen3/Eigen/src/Geometry/Homogeneous.h | 307 ----
include/eigen3/Eigen/src/Geometry/Hyperplane.h | 280 ---
include/eigen3/Eigen/src/Geometry/OrthoMethods.h | 218 ---
.../eigen3/Eigen/src/Geometry/ParametrizedLine.h | 195 ---
include/eigen3/Eigen/src/Geometry/Quaternion.h | 778 --------
include/eigen3/Eigen/src/Geometry/Rotation2D.h | 160 --
include/eigen3/Eigen/src/Geometry/RotationBase.h | 206 ---
include/eigen3/Eigen/src/Geometry/Scaling.h | 166 --
include/eigen3/Eigen/src/Geometry/Transform.h | 1455 ---------------
include/eigen3/Eigen/src/Geometry/Translation.h | 206 ---
include/eigen3/Eigen/src/Geometry/Umeyama.h | 177 --
.../eigen3/Eigen/src/Geometry/arch/Geometry_SSE.h | 115 --
.../Eigen/src/Householder/BlockHouseholder.h | 68 -
include/eigen3/Eigen/src/Householder/Householder.h | 171 --
.../Eigen/src/Householder/HouseholderSequence.h | 441 -----
.../IterativeLinearSolvers/BasicPreconditioners.h | 149 --
.../Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | 275 ---
.../src/IterativeLinearSolvers/ConjugateGradient.h | 265 ---
.../src/IterativeLinearSolvers/IncompleteLUT.h | 467 -----
.../IterativeLinearSolvers/IterativeSolverBase.h | 254 ---
include/eigen3/Eigen/src/Jacobi/Jacobi.h | 433 -----
include/eigen3/Eigen/src/LU/Determinant.h | 101 --
include/eigen3/Eigen/src/LU/FullPivLU.h | 743 --------
include/eigen3/Eigen/src/LU/Inverse.h | 400 -----
include/eigen3/Eigen/src/LU/PartialPivLU.h | 501 ------
include/eigen3/Eigen/src/LU/PartialPivLU_MKL.h | 85 -
include/eigen3/Eigen/src/LU/arch/Inverse_SSE.h | 329 ----
.../eigen3/Eigen/src/MetisSupport/MetisSupport.h | 137 --
include/eigen3/Eigen/src/OrderingMethods/Amd.h | 435 -----
.../Eigen/src/OrderingMethods/Eigen_Colamd.h | 1850 --------------------
.../eigen3/Eigen/src/OrderingMethods/Ordering.h | 154 --
.../eigen3/Eigen/src/PaStiXSupport/PaStiXSupport.h | 721 --------
.../Eigen/src/PardisoSupport/PardisoSupport.h | 592 -------
include/eigen3/Eigen/src/QR/ColPivHouseholderQR.h | 580 ------
.../eigen3/Eigen/src/QR/ColPivHouseholderQR_MKL.h | 99 --
include/eigen3/Eigen/src/QR/FullPivHouseholderQR.h | 614 -------
include/eigen3/Eigen/src/QR/HouseholderQR.h | 374 ----
include/eigen3/Eigen/src/QR/HouseholderQR_MKL.h | 69 -
.../Eigen/src/SPQRSupport/SuiteSparseQRSupport.h | 314 ----
include/eigen3/Eigen/src/SVD/JacobiSVD.h | 969 ----------
include/eigen3/Eigen/src/SVD/JacobiSVD_MKL.h | 92 -
.../eigen3/Eigen/src/SVD/UpperBidiagonalization.h | 148 --
.../Eigen/src/SparseCholesky/SimplicialCholesky.h | 671 -------
.../src/SparseCholesky/SimplicialCholesky_impl.h | 199 ---
include/eigen3/Eigen/src/SparseCore/AmbiVector.h | 373 ----
.../Eigen/src/SparseCore/CompressedStorage.h | 233 ---
.../SparseCore/ConservativeSparseSparseProduct.h | 245 ---
.../Eigen/src/SparseCore/MappedSparseMatrix.h | 181 --
include/eigen3/Eigen/src/SparseCore/SparseBlock.h | 499 ------
.../eigen3/Eigen/src/SparseCore/SparseColEtree.h | 206 ---
.../Eigen/src/SparseCore/SparseCwiseBinaryOp.h | 325 ----
.../Eigen/src/SparseCore/SparseCwiseUnaryOp.h | 163 --
.../Eigen/src/SparseCore/SparseDenseProduct.h | 311 ----
.../Eigen/src/SparseCore/SparseDiagonalProduct.h | 196 ---
include/eigen3/Eigen/src/SparseCore/SparseDot.h | 101 --
include/eigen3/Eigen/src/SparseCore/SparseFuzzy.h | 26 -
include/eigen3/Eigen/src/SparseCore/SparseMatrix.h | 1259 -------------
.../eigen3/Eigen/src/SparseCore/SparseMatrixBase.h | 452 -----
.../Eigen/src/SparseCore/SparsePermutation.h | 148 --
.../eigen3/Eigen/src/SparseCore/SparseProduct.h | 188 --
include/eigen3/Eigen/src/SparseCore/SparseRedux.h | 45 -
.../Eigen/src/SparseCore/SparseSelfAdjointView.h | 507 ------
.../SparseCore/SparseSparseProductWithPruning.h | 150 --
.../eigen3/Eigen/src/SparseCore/SparseTranspose.h | 63 -
.../Eigen/src/SparseCore/SparseTriangularView.h | 179 --
include/eigen3/Eigen/src/SparseCore/SparseUtil.h | 173 --
include/eigen3/Eigen/src/SparseCore/SparseVector.h | 447 -----
include/eigen3/Eigen/src/SparseCore/SparseView.h | 99 --
.../eigen3/Eigen/src/SparseCore/TriangularSolver.h | 334 ----
include/eigen3/Eigen/src/SparseLU/SparseLU.h | 757 --------
include/eigen3/Eigen/src/SparseLU/SparseLUImpl.h | 64 -
.../eigen3/Eigen/src/SparseLU/SparseLU_Memory.h | 227 ---
.../eigen3/Eigen/src/SparseLU/SparseLU_Structs.h | 111 --
.../Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h | 298 ----
include/eigen3/Eigen/src/SparseLU/SparseLU_Utils.h | 80 -
.../Eigen/src/SparseLU/SparseLU_column_bmod.h | 180 --
.../Eigen/src/SparseLU/SparseLU_column_dfs.h | 177 --
.../Eigen/src/SparseLU/SparseLU_copy_to_ucol.h | 106 --
.../Eigen/src/SparseLU/SparseLU_gemm_kernel.h | 279 ---
.../Eigen/src/SparseLU/SparseLU_heap_relax_snode.h | 127 --
.../Eigen/src/SparseLU/SparseLU_kernel_bmod.h | 130 --
.../Eigen/src/SparseLU/SparseLU_panel_bmod.h | 223 ---
.../eigen3/Eigen/src/SparseLU/SparseLU_panel_dfs.h | 258 ---
.../eigen3/Eigen/src/SparseLU/SparseLU_pivotL.h | 134 --
.../eigen3/Eigen/src/SparseLU/SparseLU_pruneL.h | 135 --
.../Eigen/src/SparseLU/SparseLU_relax_snode.h | 83 -
include/eigen3/Eigen/src/SparseQR/SparseQR.h | 714 --------
include/eigen3/Eigen/src/StlSupport/StdDeque.h | 134 --
include/eigen3/Eigen/src/StlSupport/StdList.h | 114 --
include/eigen3/Eigen/src/StlSupport/StdVector.h | 126 --
include/eigen3/Eigen/src/StlSupport/details.h | 84 -
.../Eigen/src/SuperLUSupport/SuperLUSupport.h | 1026 -----------
.../Eigen/src/UmfPackSupport/UmfPackSupport.h | 474 -----
include/eigen3/Eigen/src/misc/Image.h | 84 -
include/eigen3/Eigen/src/misc/Kernel.h | 81 -
include/eigen3/Eigen/src/misc/Solve.h | 76 -
include/eigen3/Eigen/src/misc/SparseSolve.h | 128 --
include/eigen3/Eigen/src/misc/blas.h | 658 -------
.../eigen3/Eigen/src/plugins/ArrayCwiseBinaryOps.h | 211 ---
.../eigen3/Eigen/src/plugins/ArrayCwiseUnaryOps.h | 203 ---
include/eigen3/Eigen/src/plugins/BlockMethods.h | 935 ----------
.../Eigen/src/plugins/CommonCwiseBinaryOps.h | 46 -
.../eigen3/Eigen/src/plugins/CommonCwiseUnaryOps.h | 172 --
.../Eigen/src/plugins/MatrixCwiseBinaryOps.h | 126 --
.../eigen3/Eigen/src/plugins/MatrixCwiseUnaryOps.h | 67 -
include/eigen3/signature_of_eigen3_matrix_library | 1 -
include/eigen3/unsupported/Eigen/AdolcForward | 156 --
include/eigen3/unsupported/Eigen/AlignedVector3 | 190 --
include/eigen3/unsupported/Eigen/AutoDiff | 40 -
include/eigen3/unsupported/Eigen/BVH | 95 -
include/eigen3/unsupported/Eigen/FFT | 418 -----
include/eigen3/unsupported/Eigen/IterativeSolvers | 45 -
include/eigen3/unsupported/Eigen/KroneckerProduct | 34 -
.../eigen3/unsupported/Eigen/LevenbergMarquardt | 45 -
include/eigen3/unsupported/Eigen/MPRealSupport | 203 ---
include/eigen3/unsupported/Eigen/MatrixFunctions | 447 -----
include/eigen3/unsupported/Eigen/MoreVectorization | 24 -
.../eigen3/unsupported/Eigen/NonLinearOptimization | 134 --
include/eigen3/unsupported/Eigen/NumericalDiff | 56 -
include/eigen3/unsupported/Eigen/OpenGLSupport | 322 ----
include/eigen3/unsupported/Eigen/Polynomials | 138 --
include/eigen3/unsupported/Eigen/Skyline | 39 -
include/eigen3/unsupported/Eigen/SparseExtra | 56 -
include/eigen3/unsupported/Eigen/Splines | 31 -
.../Eigen/src/AutoDiff/AutoDiffJacobian.h | 83 -
.../Eigen/src/AutoDiff/AutoDiffScalar.h | 642 -------
.../Eigen/src/AutoDiff/AutoDiffVector.h | 220 ---
.../unsupported/Eigen/src/BVH/BVAlgorithms.h | 293 ----
include/eigen3/unsupported/Eigen/src/BVH/KdBVH.h | 222 ---
.../unsupported/Eigen/src/FFT/ei_fftw_impl.h | 261 ---
.../unsupported/Eigen/src/FFT/ei_kissfft_impl.h | 420 -----
.../src/IterativeSolvers/ConstrainedConjGrad.h | 189 --
.../Eigen/src/IterativeSolvers/DGMRES.h | 542 ------
.../unsupported/Eigen/src/IterativeSolvers/GMRES.h | 383 ----
.../src/IterativeSolvers/IncompleteCholesky.h | 278 ---
.../Eigen/src/IterativeSolvers/IncompleteLU.h | 113 --
.../src/IterativeSolvers/IterationController.h | 154 --
.../Eigen/src/IterativeSolvers/MINRES.h | 302 ----
.../Eigen/src/IterativeSolvers/Scaling.h | 185 --
.../src/KroneckerProduct/KroneckerTensorProduct.h | 244 ---
.../Eigen/src/MatrixFunctions/MatrixExponential.h | 451 -----
.../Eigen/src/MatrixFunctions/MatrixFunction.h | 591 -------
.../src/MatrixFunctions/MatrixFunctionAtomic.h | 131 --
.../Eigen/src/MatrixFunctions/MatrixLogarithm.h | 486 -----
.../Eigen/src/MatrixFunctions/MatrixPower.h | 508 ------
.../Eigen/src/MatrixFunctions/MatrixSquareRoot.h | 466 -----
.../Eigen/src/MatrixFunctions/StemFunction.h | 105 --
.../Eigen/src/MoreVectorization/MathFunctions.h | 95 -
.../NonLinearOptimization/HybridNonLinearSolver.h | 601 -------
.../src/NonLinearOptimization/LevenbergMarquardt.h | 650 -------
.../Eigen/src/NonLinearOptimization/chkder.h | 66 -
.../Eigen/src/NonLinearOptimization/covar.h | 70 -
.../Eigen/src/NonLinearOptimization/dogleg.h | 107 --
.../Eigen/src/NonLinearOptimization/fdjac1.h | 79 -
.../Eigen/src/NonLinearOptimization/lmpar.h | 298 ----
.../Eigen/src/NonLinearOptimization/qrsolv.h | 91 -
.../Eigen/src/NonLinearOptimization/r1mpyq.h | 30 -
.../Eigen/src/NonLinearOptimization/r1updt.h | 99 --
.../Eigen/src/NonLinearOptimization/rwupdt.h | 49 -
.../Eigen/src/NumericalDiff/NumericalDiff.h | 130 --
.../unsupported/Eigen/src/Polynomials/Companion.h | 276 ---
.../Eigen/src/Polynomials/PolynomialSolver.h | 389 ----
.../Eigen/src/Polynomials/PolynomialUtils.h | 143 --
.../Eigen/src/Skyline/SkylineInplaceLU.h | 352 ----
.../unsupported/Eigen/src/Skyline/SkylineMatrix.h | 862 ---------
.../Eigen/src/Skyline/SkylineMatrixBase.h | 212 ---
.../unsupported/Eigen/src/Skyline/SkylineProduct.h | 295 ----
.../unsupported/Eigen/src/Skyline/SkylineStorage.h | 259 ---
.../unsupported/Eigen/src/Skyline/SkylineUtil.h | 89 -
.../src/SparseExtra/BlockOfDynamicSparseMatrix.h | 122 --
.../Eigen/src/SparseExtra/DynamicSparseMatrix.h | 357 ----
.../unsupported/Eigen/src/SparseExtra/MarketIO.h | 273 ---
.../Eigen/src/SparseExtra/MatrixMarketIterator.h | 232 ---
.../Eigen/src/SparseExtra/RandomSetter.h | 327 ----
.../eigen3/unsupported/Eigen/src/Splines/Spline.h | 474 -----
.../unsupported/Eigen/src/Splines/SplineFitting.h | 156 --
.../unsupported/Eigen/src/Splines/SplineFwd.h | 86 -
include/obsolete/IterativeOptimizer.hpp | 1198 -------------
include/obsolete/KFITF.hpp | 158 --
include/obsolete/LinearSystemBuilder.hpp | 170 --
include/obsolete/PoissonSolver.hpp | 320 ----
include/obsolete/affymetrix_utils.hpp | 62 -
include/obsolete/graph_utils.hpp | 82 -
include/obsolete/linq.h | 473 -----
include/obsolete/set_multicover_solver.hpp | 492 ------
include/obsolete/transcript_segmenter.hpp | 1132 ------------
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