[med-svn] [kineticstools] branch master updated (d46ddce -> 2d5f206)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository kineticstools.

      from  d46ddce   kineticstools (0.5.1+20150828+git3aa3d96+dfsg-2) unstable; urgency=low
       new  5ef124e   Imported Upstream version 0.5.2+dfsg
       new  9465e34   Merge tag 'upstream/0.5.2+dfsg'
       new  26d43ac   Prepare new revision
       new  53dec34   Refresh patches
       new  5cf9be2   Bump minimum version of dependencies
       new  c9cc788   Bump Standards-Version to 3.9.8
       new  7b3a848   Globally use C.UTF-8 locale
       new  5cdfb86   Enable build-time tests with respected exit code
       new  1647131   Set up autopkgtest
       new  2d5f206   releasing package kineticstools version 0.5.2+dfsg-1

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 .circleci/installHDF5.sh                           | 14 +++++
 circle.yml                                         | 18 ++++++
 debian/changelog                                   | 14 +++++
 debian/control                                     |  6 +-
 debian/patches/compiled-extension.patch            | 63 ++++++++++++++++++++
 ...activate-tests-requiring-unavailable-data.patch |  4 +-
 debian/patches/series                              |  1 +
 debian/patches/tests-import.patch                  |  4 +-
 debian/patches/verbose-testing.patch               |  4 +-
 debian/rules                                       | 14 ++---
 debian/tests/control                               | 13 +++++
 kineticsTools/ipdSummary.py                        | 68 ++++++++++------------
 kineticsTools/summarizeModifications.py            | 18 +++---
 requirements-ci.txt                                | 12 ++++
 requirements-dev.txt                               |  3 +
 setup.py                                           |  6 +-
 test/cram/case-ctrl.t                              |  2 +-
 test/cram/detection.t                              |  2 +-
 test/cram/detection_bam.t                          |  8 +--
 test/cram/detection_bam_dataset.t                  |  8 +--
 test/cram/detection_bam_lossless.t                 |  6 +-
 test/cram/identify.t                               |  2 +-
 test/cram/long_running/README.txt                  |  6 +-
 test/cram/long_running/detect_and_identify_Bsub.t  |  4 +-
 test/cram/long_running/detect_and_identify_Cagg.t  |  2 +-
 test/cram/long_running/detect_and_identify_Hpyl.t  |  4 +-
 test/cram/long_running/detect_and_identify_Mjan.t  |  2 +-
 test/cram/long_running/run_jenkins.sh              | 19 ++++++
 test/cram/methyl-fraction-case-ctrl.t              |  2 +-
 test/cram/version.t                                |  9 +--
 test/test_ReferenceUtils.py                        |  4 +-
 test/test_inputs.py                                | 60 +++++++++++++++++--
 test/test_tool_contract.py                         |  6 +-
 33 files changed, 306 insertions(+), 102 deletions(-)
 create mode 100644 .circleci/installHDF5.sh
 create mode 100644 circle.yml
 create mode 100644 debian/patches/compiled-extension.patch
 create mode 100644 debian/tests/control
 create mode 100644 requirements-ci.txt
 create mode 100644 requirements-dev.txt
 create mode 100755 test/cram/long_running/run_jenkins.sh

-- 
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