[med-svn] [art-nextgen-simulation-tools] 04/04: Adapt patch

[Andreas Tille]

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tille pushed a commit to branch master
in repository art-nextgen-simulation-tools.

commit 53faee2369530b74fcaf4e82833116fa9ee2c034
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jul 3 22:56:08 2016 +0200

    Adapt patch
---
 debian/patches/adapt_path_to_perl_scripts.patch | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/debian/patches/adapt_path_to_perl_scripts.patch b/debian/patches/adapt_path_to_perl_scripts.patch
index b98d7ed..36f7f81 100644
--- a/debian/patches/adapt_path_to_perl_scripts.patch
+++ b/debian/patches/adapt_path_to_perl_scripts.patch
@@ -5,12 +5,12 @@ Description: Main executable and private scripts will not be installed
 
 --- a/ART_profiler_illumina/art_profiler_illumina
 +++ b/ART_profiler_illumina/art_profiler_illumina
-@@ -3,7 +3,7 @@
- # fastq files
- #Weichun Huang at whduke at gmail.com
+@@ -73,7 +73,7 @@ if  [[ ! -e $iDIR ]]; then echo "Error:
+ ls $iDIR/*.$ext 2>/dev/null 1>&2
+ if [ $? -gt 0 ]; then echo "Error: no *.$ext fastq files in $iDIR"; exit 1;  fi
  
 -pDIR=`dirname $0`
 +pDIR=/usr/lib/art-nextgen-simulation-tools
- ext=fq
- if [[ $# -eq 2 ]]; then
-        	outFile=$1
+ export pDIR
+ export ext;
+ 

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