[med-svn] [libsmithwaterman] 06/07: disorder is removed from tarball in favour of using Debian packaged library

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository libsmithwaterman.

commit 81d1df3cf37c03ead266d1ba1742275ec1fbbcf4
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jul 5 14:58:45 2016 +0200

    disorder is removed from tarball in favour of using Debian packaged library
---
 debian/control                | 3 ++-
 debian/patches/autoconf.patch | 6 +++---
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/debian/control b/debian/control
index ded3bb8..53782fd 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,8 @@ Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9),
                dh-autoreconf,
-               d-shlibs
+               d-shlibs,
+               libdisorder-dev
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libsmithwaterman.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/libsmithwaterman.git
diff --git a/debian/patches/autoconf.patch b/debian/patches/autoconf.patch
index 3b49763..bd39a6f 100644
--- a/debian/patches/autoconf.patch
+++ b/debian/patches/autoconf.patch
@@ -8,15 +8,15 @@ Description: Add autoconf stuff to enable simple library creation
 +lib_LTLIBRARIES  = libsmithwaterman.la
 +
 +libsmithwatermandir=$(includedir)/smithwaterman
-+libsmithwaterman_HEADERS=BandedSmithWaterman.h  IndelAllele.h  LeftAlign.h  Mosaik.h  Repeats.h  SmithWatermanGotoh.h  convert.h  disorder.h
-+libsmithwaterman_la_SOURCES = BandedSmithWaterman.cpp disorder.cpp IndelAllele.cpp LeftAlign.cpp Repeats.cpp SmithWatermanGotoh.cpp
++libsmithwaterman_HEADERS=BandedSmithWaterman.h  IndelAllele.h  LeftAlign.h  Mosaik.h  Repeats.h  SmithWatermanGotoh.h  convert.h
++libsmithwaterman_la_SOURCES = BandedSmithWaterman.cpp IndelAllele.cpp LeftAlign.cpp Repeats.cpp SmithWatermanGotoh.cpp
 +libsmithwaterman_la_LDFLAGS = -version-info @LIB_VERSION@
 +
 +libsmithwaterman_la_CPPFLAGS = $(INCLUDES)
 +
 +bin_PROGRAMS = smithwaterman
 +smithwaterman_SOURCES = smithwaterman.cpp
-+LDADD = -lsmithwaterman
++LDADD = -lsmithwaterman -ldisorder
 +
 +pkgconfigdir=$(libdir)/pkgconfig
 +pkgconfig_DATA = libsmithwaterman.pc

-- 
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