[med-svn] [python-mne] branch master updated (4abda55 -> 00af02c)
Yaroslav Halchenko
debian at onerussian.com
Sun Jul 10 22:22:44 UTC 2016
This is an automated email from the git hooks/post-receive script.
yoh pushed a change to branch master
in repository python-mne.
from 4abda55 debian/patches/fix_test - dropped, upstreamed
new 947cbfb Imported Upstream version 0.12+dfsg
new eae569b Merge tag 'upstream/0.12+dfsg'
new 65ba7d8 Fresh upstream release - boosted policy to 3.9.8
new 5e3c232 suggest python-pycuda
new 0a55e25 refreshed patch
new f6b77c0 added patch changeset_154d7e5da710f08341eba50867da90525f52059c.diff to "cherry-pick" 154d7e5da710f08341eba50867da90525f52059c (BF: use tvtk.configure_input instead of direct input=src)
new 00af02c debian/control - make recent mayavi2 (>= 4.4.3-1) the lead bdepends to python-vtk{6,}
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 9 +
.mailmap | 3 +
.travis.yml | 10 +-
LICENSE.txt | 4 +-
MANIFEST.in | 1 +
Makefile | 18 +-
README.rst | 27 +-
appveyor.yml | 1 +
circle.yml | 83 ++
debian/changelog | 19 +
debian/control | 5 +-
...t_154d7e5da710f08341eba50867da90525f52059c.diff | 25 +
debian/patches/deb_paths | 8 +-
debian/patches/series | 1 +
dictionary.txt | 273 ++++++-
doc/Makefile | 34 +-
doc/_static/style.css | 107 ++-
doc/_templates/function.rst | 4 +
doc/advanced_setup.rst | 163 ----
doc/cite.rst | 4 +-
doc/cited.rst | 112 +++
doc/conf.py | 166 ++--
doc/contributing.rst | 22 +-
doc/faq.rst | 185 ++++-
doc/getting_started.rst | 376 +++------
doc/git_links.inc | 8 +-
doc/index.rst | 74 +-
doc/{getting_started.rst => install_mne_c.rst} | 173 ++--
doc/install_mne_python.rst | 277 +++++++
doc/manual/appendix/bem_model.rst | 4 +-
doc/manual/appendix/c_EULA.rst | 4 +-
doc/manual/appendix/c_release_notes.rst | 10 +-
doc/manual/c_reference.rst | 53 +-
doc/manual/channel_interpolation.rst | 75 ++
doc/manual/cookbook.rst | 18 +-
doc/manual/datasets_index.rst | 11 +-
doc/manual/decoding.rst | 3 +-
doc/manual/gui/analyze.rst | 2 +-
doc/manual/gui/browse.rst | 4 +-
doc/manual/index.rst | 93 ++-
doc/manual/io.rst | 35 +-
doc/manual/matlab.rst | 11 +-
doc/manual/memory.rst | 9 +-
doc/manual/migrating.rst | 54 ++
doc/manual/pitfalls.rst | 26 +-
doc/manual/preprocessing/maxwell.rst | 76 ++
doc/manual/preprocessing/ssp.rst | 21 +-
doc/manual/sample_dataset.rst | 9 +-
doc/manual/source_localization/covariance.rst | 5 -
doc/manual/source_localization/forward.rst | 12 +-
doc/manual/source_localization/inverse.rst | 84 +-
doc/manual/time_frequency.rst | 10 +-
doc/martinos.rst | 35 +
doc/mne_cpp.rst | 10 +-
doc/python_reference.rst | 85 +-
doc/references.rst | 14 +-
doc/sphinxext/cited_mne.py | 252 ++++++
doc/sphinxext/flow_diagram.py | 2 +-
doc/sphinxext/{commands.py => gen_commands.py} | 23 +-
doc/this_project.inc | 6 +-
doc/tutorials.rst | 196 +++--
doc/tutorials/command_line.rst | 26 +-
doc/tutorials/mne-report.png | Bin 172544 -> 159506 bytes
doc/tutorials/report.rst | 66 +-
doc/tutorials/seven_stories_about_mne.rst | 171 ++++
doc/whats_new.rst | 389 +++++++--
examples/README.txt | 5 +-
.../connectivity/plot_cwt_sensor_connectivity.py | 4 +-
.../plot_mne_inverse_coherence_epochs.py | 5 +-
.../plot_mne_inverse_connectivity_spectrum.py | 5 +-
.../plot_mne_inverse_label_connectivity.py | 5 +-
.../connectivity/plot_mne_inverse_psi_visual.py | 3 +-
examples/connectivity/plot_sensor_connectivity.py | 4 +-
examples/datasets/plot_brainstorm_data.py | 16 +-
examples/datasets/plot_megsim_data.py | 4 +-
examples/datasets/plot_spm_faces_dataset.py | 28 +-
examples/decoding/plot_decoding_csp_eeg.py | 2 +-
examples/decoding/plot_decoding_csp_space.py | 14 +-
.../plot_decoding_spatio_temporal_source.py | 5 +-
.../decoding/plot_decoding_time_generalization.py | 55 --
...plot_decoding_time_generalization_conditions.py | 2 +-
examples/decoding/plot_decoding_xdawn_eeg.py | 2 +-
examples/decoding/plot_ems_filtering.py | 2 +-
examples/decoding/plot_linear_model_patterns.py | 6 +-
examples/forward/plot_bem_contour_mri.py | 27 -
examples/forward/plot_coregistration_transform.py | 33 -
...forward.py => plot_forward_sensitivity_maps.py} | 27 +-
examples/forward/plot_read_forward.py | 67 --
.../plot_compute_mne_inverse_epochs_in_label.py | 5 +-
.../plot_compute_mne_inverse_raw_in_label.py | 3 +-
examples/inverse/plot_covariance_whitening_dspm.py | 116 ++-
examples/inverse/plot_dics_beamformer.py | 3 +-
examples/inverse/plot_dics_source_power.py | 3 +-
examples/inverse/plot_dipole_fit.py | 43 -
examples/inverse/plot_lcmv_beamformer.py | 24 +-
examples/inverse/plot_lcmv_beamformer_volume.py | 16 +-
examples/inverse/plot_make_inverse_operator.py | 84 --
examples/inverse/plot_tf_dics.py | 21 +-
examples/inverse/plot_tf_lcmv.py | 31 +-
examples/io/README.txt | 3 +-
examples/io/plot_objects_from_arrays.py | 15 +-
examples/io/plot_read_and_write_raw_data.py | 2 +-
examples/io/plot_read_epochs.py | 2 +-
examples/io/plot_read_evoked.py | 5 +
examples/plot_compute_mne_inverse.py | 60 --
examples/plot_extract_events_from_raw.py | 41 -
examples/plot_from_raw_to_epochs_to_evoked.py | 77 --
examples/preprocessing/plot_corrmap_detection.py | 76 --
.../preprocessing/plot_define_target_events.py | 2 +-
.../preprocessing/plot_eog_artifact_histogram.py | 2 +-
.../plot_estimate_covariance_matrix_baseline.py | 55 --
.../plot_estimate_covariance_matrix_raw.py | 38 -
examples/preprocessing/plot_find_ecg_artifacts.py | 2 +-
examples/preprocessing/plot_find_eog_artifacts.py | 2 +-
.../preprocessing/plot_movement_compensation.py | 53 ++
examples/preprocessing/plot_rereference_eeg.py | 2 +-
examples/preprocessing/plot_resample.py | 16 +-
examples/preprocessing/plot_run_ica.py | 3 +-
examples/preprocessing/plot_xdawn_denoising.py | 2 +-
examples/realtime/ftclient_rt_compute_psd.py | 4 +-
examples/realtime/plot_compute_rt_average.py | 3 +-
examples/realtime/plot_compute_rt_decoder.py | 2 +-
examples/realtime/rt_feedback_server.py | 2 +-
examples/simulation/plot_simulate_evoked_data.py | 20 +-
examples/simulation/plot_simulate_raw_data.py | 7 +-
examples/stats/plot_cluster_stats_evoked.py | 4 +-
examples/stats/plot_fdr_stats_evoked.py | 2 +-
examples/stats/plot_linear_regression_raw.py | 51 +-
examples/stats/plot_sensor_permutation_test.py | 4 +-
examples/stats/plot_sensor_regression.py | 2 +-
.../plot_compute_raw_data_spectrum.py | 42 +-
.../plot_compute_source_psd_epochs.py | 3 +-
examples/time_frequency/plot_epochs_spectra.py | 45 --
.../plot_source_label_time_frequency.py | 2 +-
.../time_frequency/plot_source_power_spectrum.py | 2 +-
.../plot_source_space_time_frequency.py | 2 +-
examples/time_frequency/plot_stockwell.py | 50 --
examples/time_frequency/plot_temporal_whitening.py | 4 +-
.../plot_time_frequency_multitaper_sensors.py | 55 --
.../time_frequency/plot_time_frequency_sensors.py | 66 --
.../visualization/plot_channel_epochs_image.py | 2 +-
examples/visualization/plot_clickable_image.py | 2 +-
examples/visualization/plot_evoked_delayed_ssp.py | 95 ---
examples/visualization/plot_evoked_erf_erp.py | 51 --
examples/visualization/plot_evoked_topomap.py | 3 +
.../plot_evoked_topomap_delayed_ssp.py | 62 --
examples/visualization/plot_evoked_whitening.py | 2 +-
examples/visualization/plot_meg_eeg_fields_3d.py | 46 --
examples/visualization/plot_meg_sensors.py | 42 +
.../plot_ssp_projs_sensitivity_map.py | 5 +-
examples/visualization/plot_ssp_projs_topomaps.py | 29 -
.../plot_topo_channel_epochs_image.py | 55 --
.../visualization/plot_topo_compare_conditions.py | 3 +-
examples/visualization/plot_topo_customized.py | 8 +-
examples/visualization/plot_topography.py | 31 -
mne/__init__.py | 16 +-
mne/annotations.py | 113 +++
mne/baseline.py | 99 +--
mne/beamformer/_dics.py | 10 +-
mne/beamformer/_lcmv.py | 30 +-
mne/beamformer/tests/test_dics.py | 5 +-
mne/beamformer/tests/test_lcmv.py | 93 +--
mne/bem.py | 211 +++--
mne/channels/channels.py | 181 +++--
.../data/layouts/Vectorview-grad_norm.lout | 103 +++
mne/channels/interpolation.py | 42 +-
mne/channels/layout.py | 93 ++-
mne/channels/montage.py | 151 +++-
mne/channels/tests/test_channels.py | 37 +-
mne/channels/tests/test_interpolation.py | 23 +-
mne/channels/tests/test_layout.py | 78 +-
mne/channels/tests/test_montage.py | 63 +-
mne/chpi.py | 659 ++++++++++------
mne/commands/mne_browse_raw.py | 5 +-
mne/commands/mne_bti2fiff.py | 3 +-
mne/commands/mne_clean_eog_ecg.py | 2 +-
mne/commands/mne_compute_proj_ecg.py | 15 +-
mne/commands/mne_compute_proj_eog.py | 4 +-
mne/commands/mne_coreg.py | 2 +-
mne/commands/mne_freeview_bem_surfaces.py | 2 +-
mne/commands/mne_kit2fiff.py | 2 +-
mne/commands/mne_make_scalp_surfaces.py | 3 +-
mne/commands/mne_maxfilter.py | 2 +-
mne/commands/mne_show_info.py | 34 +
mne/commands/mne_surf2bem.py | 2 +-
mne/commands/tests/test_commands.py | 12 +-
mne/connectivity/spectral.py | 9 +-
mne/cov.py | 389 +++++----
mne/cuda.py | 74 +-
mne/data/coil_def.dat | 29 +-
mne/datasets/__init__.py | 8 +-
mne/datasets/brainstorm/bst_auditory.py | 2 +-
mne/datasets/brainstorm/bst_raw.py | 2 +-
mne/datasets/brainstorm/bst_resting.py | 2 +-
mne/datasets/megsim/megsim.py | 2 +-
mne/datasets/megsim/urls.py | 7 +
mne/datasets/misc/__init__.py | 4 +
mne/datasets/misc/_misc.py | 18 +
mne/datasets/spm_face/__init__.py | 2 +-
mne/datasets/spm_face/spm_data.py | 14 +-
mne/datasets/testing/__init__.py | 2 +-
mne/datasets/utils.py | 181 +++--
mne/decoding/base.py | 10 +-
mne/decoding/csp.py | 10 +-
mne/decoding/ems.py | 19 +-
mne/decoding/tests/test_csp.py | 17 +-
mne/decoding/tests/test_ems.py | 6 +-
mne/decoding/tests/test_time_gen.py | 251 ++++--
mne/decoding/tests/test_transformer.py | 8 +-
mne/decoding/time_gen.py | 868 +++++++++++++--------
mne/decoding/transformer.py | 34 +-
mne/defaults.py | 23 +-
mne/dipole.py | 517 +++++++++---
mne/epochs.py | 665 +++++++++++-----
mne/event.py | 129 ++-
mne/evoked.py | 650 +++++++++------
mne/filter.py | 97 ++-
mne/fixes.py | 95 ++-
mne/forward/__init__.py | 7 +-
mne/forward/_compute_forward.py | 28 +-
mne/forward/_field_interpolation.py | 27 +-
mne/forward/_lead_dots.py | 60 +-
mne/forward/_make_forward.py | 225 +++++-
mne/forward/forward.py | 211 +++--
mne/forward/tests/test_field_interpolation.py | 45 +-
mne/forward/tests/test_forward.py | 29 +-
mne/forward/tests/test_make_forward.py | 260 +++---
mne/gui/__init__.py | 19 +-
mne/gui/_backend.py | 27 +
mne/inverse_sparse/_gamma_map.py | 7 +-
mne/inverse_sparse/mxne_optim.py | 17 +-
mne/inverse_sparse/tests/test_gamma_map.py | 53 +-
mne/inverse_sparse/tests/test_mxne_inverse.py | 2 +-
mne/io/__init__.py | 8 +-
mne/io/array/array.py | 15 +-
mne/io/array/tests/test_array.py | 12 +-
mne/io/base.py | 576 ++++++++------
mne/io/brainvision/brainvision.py | 171 ++--
mne/io/brainvision/tests/test_brainvision.py | 160 ++--
mne/io/bti/bti.py | 137 ++--
mne/io/bti/read.py | 12 -
mne/io/bti/tests/test_bti.py | 88 ++-
mne/io/cnt/__init__.py | 1 +
mne/io/cnt/cnt.py | 371 +++++++++
.../numpy_ext => mne/io/cnt/tests}/__init__.py | 0
mne/io/cnt/tests/test_cnt.py | 34 +
mne/io/compensator.py | 3 +-
mne/io/constants.py | 44 +-
mne/io/ctf/ctf.py | 14 +-
mne/io/ctf/eeg.py | 48 +-
mne/io/ctf/info.py | 65 +-
mne/io/ctf/tests/test_ctf.py | 60 +-
mne/io/edf/edf.py | 36 +-
mne/io/edf/tests/test_edf.py | 15 +
mne/io/eeglab/eeglab.py | 240 ++++--
mne/io/eeglab/tests/test_eeglab.py | 53 +-
mne/io/egi/egi.py | 74 +-
mne/io/egi/tests/test_egi.py | 7 +-
mne/io/fiff/__init__.py | 2 +-
mne/io/fiff/raw.py | 77 +-
mne/io/fiff/tests/test_raw_fiff.py | 322 +++++---
mne/io/kit/constants.py | 2 +-
mne/io/kit/kit.py | 138 ++--
mne/io/matrix.py | 15 +-
mne/io/meas_info.py | 226 ++++--
mne/io/nicolet/nicolet.py | 36 +-
mne/io/pick.py | 110 ++-
mne/io/proc_history.py | 4 +-
mne/io/proj.py | 98 ++-
mne/io/reference.py | 30 +-
mne/io/tag.py | 552 ++++++-------
mne/io/tests/test_meas_info.py | 124 ++-
mne/io/tests/test_pick.py | 98 ++-
mne/io/tests/test_proc_history.py | 4 +-
mne/io/tests/test_raw.py | 10 +-
mne/io/tests/test_reference.py | 25 +-
mne/io/utils.py | 80 +-
mne/io/write.py | 4 +-
mne/label.py | 208 +++--
mne/minimum_norm/inverse.py | 38 +-
mne/minimum_norm/tests/test_inverse.py | 16 +-
mne/minimum_norm/tests/test_time_frequency.py | 14 +-
mne/minimum_norm/time_frequency.py | 30 +-
mne/parallel.py | 11 +-
mne/preprocessing/ecg.py | 21 +-
mne/preprocessing/eog.py | 7 +-
mne/preprocessing/ica.py | 252 +++---
mne/preprocessing/infomax_.py | 8 +-
mne/preprocessing/maxfilter.py | 5 +-
mne/preprocessing/maxwell.py | 833 ++++++++++++++------
mne/preprocessing/ssp.py | 6 +-
mne/preprocessing/stim.py | 11 +-
mne/preprocessing/tests/test_ctps.py | 9 +-
mne/preprocessing/tests/test_eeglab_infomax.py | 4 +-
mne/preprocessing/tests/test_ica.py | 52 +-
mne/preprocessing/tests/test_maxwell.py | 318 ++++++--
mne/preprocessing/tests/test_ssp.py | 6 +-
mne/preprocessing/tests/test_xdawn.py | 3 +-
mne/preprocessing/xdawn.py | 6 +-
mne/proj.py | 22 +-
mne/realtime/epochs.py | 4 +-
mne/realtime/fieldtrip_client.py | 23 +-
mne/realtime/tests/test_mockclient.py | 6 +-
mne/report.py | 32 +-
mne/selection.py | 117 +--
mne/simulation/evoked.py | 2 +-
mne/simulation/raw.py | 47 +-
mne/simulation/source.py | 8 +-
mne/simulation/tests/test_raw.py | 54 +-
mne/source_estimate.py | 54 +-
mne/source_space.py | 76 +-
mne/stats/cluster_level.py | 20 +-
mne/stats/parametric.py | 7 +-
mne/stats/regression.py | 121 ++-
mne/stats/tests/test_cluster_level.py | 19 +-
mne/stats/tests/test_regression.py | 21 +-
mne/surface.py | 18 +-
mne/tests/common.py | 93 ++-
mne/tests/test_annotations.py | 58 ++
mne/tests/test_bem.py | 124 ++-
mne/tests/test_chpi.py | 165 ++--
mne/tests/test_cov.py | 133 +++-
mne/tests/test_dipole.py | 173 ++--
mne/tests/test_docstring_parameters.py | 1 +
mne/tests/test_epochs.py | 348 ++++++---
mne/tests/test_event.py | 125 ++-
mne/tests/test_evoked.py | 60 +-
mne/tests/test_filter.py | 17 +-
mne/tests/test_label.py | 85 +-
mne/tests/test_proj.py | 48 +-
mne/tests/test_selection.py | 31 +-
mne/tests/test_source_estimate.py | 7 +-
mne/tests/test_source_space.py | 17 +-
mne/tests/test_surface.py | 8 +-
mne/tests/test_transforms.py | 68 +-
mne/tests/test_utils.py | 125 ++-
mne/time_frequency/__init__.py | 2 +-
mne/time_frequency/_stockwell.py | 9 +-
mne/time_frequency/csd.py | 13 +-
mne/time_frequency/multitaper.py | 175 +++--
mne/time_frequency/psd.py | 283 ++++++-
mne/time_frequency/tests/test_ar.py | 2 +-
mne/time_frequency/tests/test_multitaper.py | 17 +-
mne/time_frequency/tests/test_psd.py | 217 +++---
mne/time_frequency/tests/test_stockwell.py | 18 +-
mne/time_frequency/tests/test_tfr.py | 92 ++-
mne/time_frequency/tfr.py | 323 ++++----
mne/transforms.py | 127 +++
mne/utils.py | 388 +++++++--
mne/viz/_3d.py | 189 +++--
mne/viz/__init__.py | 7 +-
mne/viz/circle.py | 4 +-
mne/viz/decoding.py | 12 +-
mne/viz/epochs.py | 163 ++--
mne/viz/evoked.py | 398 ++++++++--
mne/viz/ica.py | 30 +-
mne/viz/misc.py | 17 +-
mne/viz/raw.py | 177 +++--
mne/viz/tests/test_3d.py | 53 +-
mne/viz/tests/test_decoding.py | 3 +-
mne/viz/tests/test_epochs.py | 30 +-
mne/viz/tests/test_evoked.py | 14 +-
mne/viz/tests/test_ica.py | 32 +-
mne/viz/tests/test_misc.py | 5 +-
mne/viz/tests/test_raw.py | 39 +-
mne/viz/tests/test_topo.py | 39 +-
mne/viz/tests/test_topomap.py | 29 +-
mne/viz/tests/test_utils.py | 34 +-
mne/viz/topo.py | 479 ++++++++----
mne/viz/topomap.py | 595 ++++++++++----
mne/viz/utils.py | 295 ++++++-
setup.cfg | 2 +-
setup.py | 4 +
tutorials/plot_artifacts_correction_filtering.py | 98 +++
tutorials/plot_artifacts_correction_ica.py | 201 +++++
.../plot_artifacts_correction_maxwell_filtering.py | 28 +-
tutorials/plot_artifacts_correction_rejection.py | 197 +++++
tutorials/plot_artifacts_correction_ssp.py | 88 +++
tutorials/plot_artifacts_detection.py | 134 ++++
tutorials/plot_brainstorm_auditory.py | 357 +++++++++
tutorials/plot_compute_covariance.py | 138 ++++
tutorials/plot_creating_data_structures.py | 19 +-
tutorials/plot_dipole_fit.py | 85 ++
tutorials/plot_eeg_erp.py | 191 +++++
tutorials/plot_epoching_and_averaging.py | 158 ++++
tutorials/plot_epochs_to_data_frame.py | 8 +-
tutorials/plot_forward.py | 181 +++++
tutorials/plot_ica_from_raw.py | 7 +-
tutorials/plot_info.py | 22 +-
tutorials/plot_introduction.py | 38 +-
...ics.py => plot_mne_dspm_source_localization.py} | 73 +-
tutorials/plot_modifying_data_inplace.py | 2 +-
...lot_epochs_objects.py => plot_object_epochs.py} | 68 +-
tutorials/plot_object_evoked.py | 74 ++
.../{plot_raw_objects.py => plot_object_raw.py} | 43 +-
tutorials/plot_python_intro.py | 46 ++
.../plot_sensors_decoding.py | 60 +-
tutorials/plot_sensors_time_frequency.py | 133 ++++
...lot_stats_cluster_1samp_test_time_frequency.py} | 5 +-
...s_tutorial.py => plot_stats_cluster_methods.py} | 35 +-
...al.py => plot_stats_cluster_spatio_temporal.py} | 58 +-
...=> plot_stats_cluster_spatio_temporal_2samp.py} | 13 +-
...ter_spatio_temporal_repeated_measures_anova.py} | 94 ++-
...ncy.py => plot_stats_cluster_time_frequency.py} | 4 +-
...ster_time_frequency_repeated_measures_anova.py} | 84 +-
... plot_stats_spatio_temporal_cluster_sensors.py} | 39 +-
tutorials/plot_visualize_epochs.py | 54 ++
tutorials/plot_visualize_evoked.py | 158 ++++
tutorials/plot_visualize_raw.py | 92 +++
409 files changed, 20148 insertions(+), 8937 deletions(-)
create mode 100644 circle.yml
create mode 100644 debian/patches/changeset_154d7e5da710f08341eba50867da90525f52059c.diff
delete mode 100644 doc/advanced_setup.rst
create mode 100644 doc/cited.rst
copy doc/{getting_started.rst => install_mne_c.rst} (64%)
create mode 100644 doc/install_mne_python.rst
create mode 100644 doc/manual/channel_interpolation.rst
create mode 100644 doc/manual/migrating.rst
create mode 100644 doc/manual/preprocessing/maxwell.rst
delete mode 100644 doc/manual/source_localization/covariance.rst
create mode 100644 doc/martinos.rst
create mode 100644 doc/sphinxext/cited_mne.py
rename doc/sphinxext/{commands.py => gen_commands.py} (73%)
create mode 100644 doc/tutorials/seven_stories_about_mne.rst
delete mode 100644 examples/decoding/plot_decoding_time_generalization.py
delete mode 100644 examples/forward/plot_bem_contour_mri.py
delete mode 100644 examples/forward/plot_coregistration_transform.py
rename examples/forward/{plot_make_forward.py => plot_forward_sensitivity_maps.py} (72%)
delete mode 100644 examples/forward/plot_read_forward.py
delete mode 100644 examples/inverse/plot_dipole_fit.py
delete mode 100644 examples/inverse/plot_make_inverse_operator.py
delete mode 100644 examples/plot_compute_mne_inverse.py
delete mode 100644 examples/plot_extract_events_from_raw.py
delete mode 100644 examples/plot_from_raw_to_epochs_to_evoked.py
delete mode 100644 examples/preprocessing/plot_corrmap_detection.py
delete mode 100644 examples/preprocessing/plot_estimate_covariance_matrix_baseline.py
delete mode 100644 examples/preprocessing/plot_estimate_covariance_matrix_raw.py
create mode 100644 examples/preprocessing/plot_movement_compensation.py
delete mode 100644 examples/time_frequency/plot_epochs_spectra.py
delete mode 100644 examples/time_frequency/plot_stockwell.py
delete mode 100644 examples/time_frequency/plot_time_frequency_multitaper_sensors.py
delete mode 100644 examples/time_frequency/plot_time_frequency_sensors.py
delete mode 100644 examples/visualization/plot_evoked_delayed_ssp.py
delete mode 100644 examples/visualization/plot_evoked_erf_erp.py
delete mode 100644 examples/visualization/plot_evoked_topomap_delayed_ssp.py
delete mode 100644 examples/visualization/plot_meg_eeg_fields_3d.py
create mode 100644 examples/visualization/plot_meg_sensors.py
delete mode 100644 examples/visualization/plot_ssp_projs_topomaps.py
delete mode 100644 examples/visualization/plot_topo_channel_epochs_image.py
delete mode 100644 examples/visualization/plot_topography.py
create mode 100644 mne/annotations.py
create mode 100644 mne/channels/data/layouts/Vectorview-grad_norm.lout
create mode 100644 mne/commands/mne_show_info.py
create mode 100644 mne/datasets/misc/__init__.py
create mode 100644 mne/datasets/misc/_misc.py
create mode 100644 mne/gui/_backend.py
create mode 100644 mne/io/cnt/__init__.py
create mode 100644 mne/io/cnt/cnt.py
copy {doc/sphinxext/numpy_ext => mne/io/cnt/tests}/__init__.py (100%)
create mode 100644 mne/io/cnt/tests/test_cnt.py
create mode 100644 mne/tests/test_annotations.py
create mode 100644 tutorials/plot_artifacts_correction_filtering.py
create mode 100644 tutorials/plot_artifacts_correction_ica.py
rename examples/preprocessing/plot_maxwell_filter.py => tutorials/plot_artifacts_correction_maxwell_filtering.py (64%)
create mode 100644 tutorials/plot_artifacts_correction_rejection.py
create mode 100644 tutorials/plot_artifacts_correction_ssp.py
create mode 100644 tutorials/plot_artifacts_detection.py
create mode 100644 tutorials/plot_brainstorm_auditory.py
create mode 100644 tutorials/plot_compute_covariance.py
create mode 100644 tutorials/plot_dipole_fit.py
create mode 100644 tutorials/plot_eeg_erp.py
create mode 100644 tutorials/plot_epoching_and_averaging.py
create mode 100644 tutorials/plot_forward.py
rename tutorials/{plot_source_localization_basics.py => plot_mne_dspm_source_localization.py} (56%)
rename tutorials/{plot_epochs_objects.py => plot_object_epochs.py} (52%)
create mode 100644 tutorials/plot_object_evoked.py
rename tutorials/{plot_raw_objects.py => plot_object_raw.py} (79%)
create mode 100644 tutorials/plot_python_intro.py
rename examples/decoding/plot_decoding_sensors.py => tutorials/plot_sensors_decoding.py (53%)
create mode 100644 tutorials/plot_sensors_time_frequency.py
rename tutorials/{plot_cluster_1samp_test_time_frequency.py => plot_stats_cluster_1samp_test_time_frequency.py} (97%)
rename tutorials/{plot_cluster_methods_tutorial.py => plot_stats_cluster_methods.py} (90%)
rename tutorials/{plot_cluster_stats_spatio_temporal.py => plot_stats_cluster_spatio_temporal.py} (78%)
rename tutorials/{plot_cluster_stats_spatio_temporal_2samp.py => plot_stats_cluster_spatio_temporal_2samp.py} (94%)
rename tutorials/{plot_cluster_stats_spatio_temporal_repeated_measures_anova.py => plot_stats_cluster_spatio_temporal_repeated_measures_anova.py} (79%)
rename tutorials/{plot_cluster_stats_time_frequency.py => plot_stats_cluster_time_frequency.py} (96%)
rename tutorials/{plot_cluster_stats_time_frequency_repeated_measures_anova.py => plot_stats_cluster_time_frequency_repeated_measures_anova.py} (79%)
rename tutorials/{plot_spatio_temporal_cluster_stats_sensor.py => plot_stats_spatio_temporal_cluster_sensors.py} (88%)
create mode 100644 tutorials/plot_visualize_epochs.py
create mode 100644 tutorials/plot_visualize_evoked.py
create mode 100644 tutorials/plot_visualize_raw.py
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