[med-svn] r22570 - in trunk/packages/rostlab/reprof/trunk/debian: . tests

[Tatiana Malygina]

Author: latticetower-guest
Date: 2016-07-17 01:06:13 +0000 (Sun, 17 Jul 2016)
New Revision: 22570

Modified:
   trunk/packages/rostlab/reprof/trunk/debian/changelog
   trunk/packages/rostlab/reprof/trunk/debian/tests/installation-test
Log:
improved debian/tests/installation-test

Modified: trunk/packages/rostlab/reprof/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/changelog	2016-07-17 00:52:51 UTC (rev 22569)
+++ trunk/packages/rostlab/reprof/trunk/debian/changelog	2016-07-17 01:06:13 UTC (rev 22570)
@@ -14,6 +14,7 @@
     https://pkg-perl.alioth.debian.org/autopkgtest.html
   * add debian/tests/pkg-perl/smoke-tests, fixed debian/tests/control and 
     debian/tests/test-models.t to make all tests work and remove redundancy
+  * improved debian/tests/installation-test
 
  -- Tatiana Malygina <merlettaia at gmail.com>  Thu, 14 Jul 2016 10:18:46 +0300
 

Modified: trunk/packages/rostlab/reprof/trunk/debian/tests/installation-test
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/tests/installation-test	2016-07-17 00:52:51 UTC (rev 22569)
+++ trunk/packages/rostlab/reprof/trunk/debian/tests/installation-test	2016-07-17 01:06:13 UTC (rev 22570)
@@ -23,20 +23,24 @@
     rm $lnk
 done
 
+echo "Run reprof for prediction from BLAST PSSM matrix..."
 # Following examples were taken from man page.
 # Prediction from BLAST PSSM matrix for best results:
 reprof -i example.Q -o example.Q.new.reprof
 [ -z $(cmp -s example.Q.new.reprof example.Q.reprof) ]
 
+echo "Run reprof for prediction from .fasta..."
 # Prediction from FASTA file:
 reprof -i example.fasta -o example.fasta.new.reprof
 [ -z $(cmp -s example.fasta.new.reprof example.fasta.reprof) ]
 
-# last example is commented for now. After thi bug would be fixed:
-# "Constructor failed at /usr/share/perl5/RG/Reprof.pm line 225."
+echo "Run reprof with --mutations parameter..."
 # Prediction from BLAST PSSM matrix file using the mutation mode:
-#reprof -i /usr/share/doc/reprof/examples/example.Q -o /tmp/mutations_example.Q.reprof --mutations /usr/share/doc/reprof/examples/mutations.txt
-            
-# Result files for the above call are going to be:
-#            # /tmp/mutations_example.Q.{reprof,reprof_F172P,reprof_M1Q,reprof_N3
-#4Y,reprof_ORI} - see --mutations for a description of the extensions.
+reprof -i example.Q -o mutations_example.Q.new.reprof --mutations mutations.txt
+[ -z $(cmp -s mutations_example.Q.new.reprof mutations_example.Q.reprof) ]
+[ -z $(cmp -s mutations_example.Q.new.reprof_F172P mutations_example.Q.reprof_F172P) ]
+[ -z $(cmp -s mutations_example.Q.new.reprof_M1Q mutations_example.Q.reprof_M1Q) ]
+[ -z $(cmp -s mutations_example.Q.new.reprof_N34Y mutations_example.Q.reprof_N34Y) ]
+[ -z $(cmp -s mutations_example.Q.new.reprof_ORI mutations_example.Q.reprof_ORI) ]
+
+echo "Reprof works as expected"