[med-svn] [eigensoft] 04/09: Merge tag 'upstream/6.1.2+dgsg'
Andreas Tille
tille at debian.org
Mon Jul 18 20:16:47 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository eigensoft.
commit 6ce0873652325254ed041b95929695354fc32794
Merge: aa2f41f dc81bb2
Author: Andreas Tille <tille at debian.org>
Date: Mon Jul 18 21:49:40 2016 +0200
Merge tag 'upstream/6.1.2+dgsg'
Upstream version 6.1.2+dgsg
EIGENSTRAT/README | 42 +-
EIGENSTRAT/example.pcaselection.chisq | 8 +
EIGENSTRAT/example.pcaselection.par | 5 +
LICENSE.txt | 32 +
POPGEN/README | 16 +-
README | 41 +-
bin/{evec2pca-ped.perl => evec2pca-ped.pl} | 0
bin/{evec2pca.perl => evec2pca.pl} | 0
bin/fixgreen | 25 -
bin/{gc.perl => gc.pl} | 0
bin/ploteig | 168 -
bin/{smarteigenstrat.perl => smarteigenstrat.pl} | 0
bin/{smartpca.perl => smartpca.pl} | 0
include/LICENSE.txt | 32 +
include/admutils.h | 393 +-
include/backup/kjg_fpca.h | 71 -
include/backup/kjg_geno.h | 137 -
include/backup/kjg_gsl.h | 73 -
include/badpairs.h | 28 +-
include/egsubs.h | 19 +-
include/eigqpsubs.h | 360 +-
include/eigsubs.h | 25 +-
include/exclude.h | 10 +-
include/getpars.h | 55 +-
include/globals.h | 2 +-
include/gval.h | 26 +-
include/kjg_fpca.h | 12 +-
include/kjg_geno.h | 137 -
include/kjg_gsl.h | 43 +-
include/lapacke.h | 16305 ---------------------
include/ldsubs.h | 62 +-
include/linsubs.h | 30 +-
include/mcio.h | 355 +-
include/mcmcpars.h | 49 +-
include/not-thread-h | 49 -
include/old.h | 43 -
include/packit.h | 12 +-
include/qpsubs.h | 373 +-
include/ranmath.h | 89 +-
include/regsubs.h | 36 +-
include/smartsubs.h | 7 +-
include/sortit.h | 34 +-
include/statsubs.h | 228 +-
include/strsubs.h | 201 +-
include/twtable.h | 12 +
include/vsubs.h | 486 +-
include/workqueue.h | 21 +-
include/xpsubs.h | 65 +-
include/xsearch.h | 42 +-
src/LICENSE.txt | 32 +
src/Makefile | 49 +-
src/admutils.c | 1894 +--
src/baseprog.c | 421 +-
src/convertf.c | 1728 ++-
src/egsubs.c | 260 +-
src/eigensrc/LICENSE.txt | 32 +
src/eigensrc/eigenstrat.c | 637 +-
src/eigensrc/eigenstratQTL.c | 609 +-
src/eigensrc/eigsubs.c | 338 +-
src/eigensrc/eigx.c | 325 +-
src/eigensrc/exclude.c | 146 +-
src/eigensrc/fffpca.c | 5448 +++----
src/eigensrc/newpca.c | 5460 +++----
src/eigensrc/old.c | 3213 ----
src/eigensrc/oldfffpca.c | 3231 ----
src/eigensrc/pcatoy.c | 47 +-
src/eigensrc/q1 | 105 -
src/eigensrc/qdiff | 1000 --
src/eigensrc/qq2.c | 29 -
src/eigensrc/qqq.c | 3139 ----
src/eigensrc/smarteigenstrat.c | 821 +-
src/eigensrc/smartpca.c | 5464 +++----
src/eigensrc/smartrel.c | 2729 ++--
src/eigensrc/smartsubs.c | 159 +-
src/eigensrc/twstats.c | 223 +-
src/eigx.c | 325 +-
src/exclude.c | 146 +-
src/gval.c | 36 +-
src/gval.h | 13 -
src/h2d.c | 146 +-
src/ksrc/LICENSE.txt | 32 +
src/ksrc/kjg_fpca.c | 38 +-
src/ksrc/kjg_gsl.c | 67 +-
src/mcio.c | 8631 ++++++-----
src/mergeit.c | 824 +-
src/mmakefile | 99 -
src/nicksrc/LICENSE.txt | 32 +
src/nicksrc/Makefile | 6 +-
src/nicksrc/gauss.c | 61 +-
src/nicksrc/gds.c | 1075 +-
src/nicksrc/getpars.c | 699 +-
src/nicksrc/linsubs.c | 532 +-
src/nicksrc/sortit.c | 362 +-
src/nicksrc/statsubs.c | 3519 +++--
src/nicksrc/strsubs.c | 2427 +--
src/nicksrc/twtable.c | 94 +
src/nicksrc/vsubs.c | 2728 ++--
src/nicksrc/xsearch.c | 458 +-
src/oldgval.c | 226 -
src/oldmakefile | 74 -
src/oldmcio.c | 4924 -------
src/pca.c | 510 +-
src/pcaselection.c | 344 +
src/qpsubs.c | 6098 ++++----
src/qq | 2 -
src/qqq.c | 5239 ++++---
src/regsubs.c | 766 +-
src/smartpca.gmon.out | Bin 143681 -> 0 bytes
src/smartpca.gmon.profile | 863 --
src/smarttables/twtable | 164 -
src/twsubs.c | 385 +-
111 files changed, 36310 insertions(+), 63433 deletions(-)
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