[med-svn] [clustalx] 05/06: More spelling fixes

[Andreas Tille]

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tille pushed a commit to branch master
in repository clustalx.

commit 3898528fdca79abb632bb050ccc0e8f1e991a6a0
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jul 21 15:03:40 2016 +0200

    More spelling fixes
---
 debian/patches/spelling.patch | 53 ++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 52 insertions(+), 1 deletion(-)

diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
index ee4fc13..3e0df9e 100644
--- a/debian/patches/spelling.patch
+++ b/debian/patches/spelling.patch
@@ -31,7 +31,7 @@ Description: Fix spelling
      catch(const exception& e)
      {
 -        cerr << "An exception has occured in the contructor of AlignmentOutput.\n"
-+        cerr << "An exception has occurred in the contructor of AlignmentOutput.\n"
++        cerr << "An exception has occurred in the constructor of AlignmentOutput.\n"
               << e.what() << "\n";
          exit(1);    
      }
@@ -441,6 +441,15 @@ Description: Fix spelling
      }
 --- a/clustalW/fileInput/MSFFileParser.cpp
 +++ b/clustalW/fileInput/MSFFileParser.cpp
+@@ -19,7 +19,7 @@ namespace clustalw
+ {
+ 
+ /**
+- * MSFFileParser contructor sets up the chartab array.
++ * MSFFileParser constructor sets up the chartab array.
+  * @param filePath 
+  * @return 
+  */
 @@ -171,7 +171,7 @@ Sequence MSFFileParser::getSeq(int seqNu
      catch(...)
      {
@@ -461,6 +470,15 @@ Description: Fix spelling
      }
 --- a/clustalW/fileInput/PIRFileParser.cpp
 +++ b/clustalW/fileInput/PIRFileParser.cpp
+@@ -19,7 +19,7 @@ namespace clustalw
+ {
+ 
+ /**
+- * PIRFileParser contructor sets up the chartab array.
++ * PIRFileParser constructor sets up the chartab array.
+  * @param filePath 
+  */
+ PIRFileParser::PIRFileParser(string filePath)
 @@ -275,7 +275,7 @@ int PIRFileParser::countSeqs()
      catch(...)
      {
@@ -481,3 +499,36 @@ Description: Fix spelling
                                   QMessageBox::Ok);     
      }
  }
+--- a/clustalW/tree/ClusterTree.cpp
++++ b/clustalW/tree/ClusterTree.cpp
+@@ -956,7 +956,7 @@ void ClusterTree::printBootstrapHeaderTo
+         (*clustalFile) << "\n Each column is 1 sequence; ";
+         (*clustalFile) << "the stars in each line show 1 group; ";
+         (*clustalFile) << "\n the dots show the other\n";
+-        (*clustalFile) << "\n Numbers show occurences in bootstrap samples.";
++        (*clustalFile) << "\n Numbers show occurrences in bootstrap samples.";
+     }
+ }
+ 
+--- a/clustalW/alignment/Sequence.cpp
++++ b/clustalW/alignment/Sequence.cpp
+@@ -40,7 +40,7 @@ Sequence::Sequence(std::string& seq, std
+ }
+ 
+ /**
+- * This is an overloaded contructor that is used to construct a seq object from an
++ * This is an overloaded constructor that is used to construct a seq object from an
+  * encoded sequenced instead of a string.
+  * @param encodedSequence 
+  * @param name 
+--- a/clustalW/tree/RandomGenerator.cpp
++++ b/clustalW/tree/RandomGenerator.cpp
+@@ -12,7 +12,7 @@ namespace clustalw
+ {
+ 
+ /**
+- * The contructor initialises the random algorithm.
++ * The constructor initialises the random algorithm.
+  * @param s 
+  * @return 
+  */

-- 
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