[med-svn] [pycorrfit] branch master updated (90f5b8f -> 8b46ba7)
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Fri Jul 22 14:23:42 UTC 2016
This is an automated email from the git hooks/post-receive script.
malex-guest pushed a change to branch master
in repository pycorrfit.
from 90f5b8f d/changelog: upload to unstable
new 0ceaeea Drop get-orig-source target
new 3be6b5d Imported Upstream version 0.9.8+dfsg
new 9299438 Merge tag 'upstream/0.9.8+dfsg'
new ee9754a Update changelog
new 6f93062 Add python-pytest-runner to Build-Depends
new f298c2f Apply cme fix dpkg
new c435bc8 Add patch fixing deprecated tex \rm commands in the documentation sources
new 853ca25 Enable hardening=+bindnow
new 2835ece Update copyright years, remove non-existing excluded file
new fe12db1 Run test manually, override dh_auto_test
new eebc091 Add python modules required for tests to Build-Depends
new b9d3696 Adjust PYTHONPATH for tests
new 8e4201e Imported Upstream version 0.9.9+dfsg
new 2a743ab Merge tag 'upstream/0.9.9+dfsg'
new 986d2da drop patch fixing pdf documentation, remove empty d/patches
new 31e70e8 Update changelog
new 6089fc2 Disable tests for now
new 8b46ba7 Update cnagelog, upload to unstable
The 18 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog.txt | 37 +-
MANIFEST.in | 3 +-
PKG-INFO | 33 -
README.md | 28 -
README.rst | 101 +++
Readme.txt | 28 -
debian/changelog | 14 +
debian/control | 9 +-
debian/copyright | 9 +-
debian/rules | 7 +-
debian/watch | 2 +-
doc/PyCorrFit_doc.tex | 2 +-
doc/PyCorrFit_doc_content.tex | 33 +-
.../CSFCS_DiO-in-DOPC.pcfs.REMOVED.git-id | 1 -
pycorrfit/__init__.py | 12 +-
pycorrfit/__main__.py | 8 +-
pycorrfit/correlation.py | 550 ++++++++++++
pycorrfit/{fcs_data_set.py => fit.py} | 923 +++++----------------
pycorrfit/gui/__init__.py | 0
pycorrfit/{ => gui}/doc.py | 48 +-
pycorrfit/{ => gui}/edclasses.py | 0
pycorrfit/{ => gui}/frontend.py | 57 +-
pycorrfit/{ => gui}/icon.py | 0
pycorrfit/{ => gui}/main.py | 0
pycorrfit/{ => gui}/misc.py | 19 -
pycorrfit/{ => gui}/page.py | 62 +-
pycorrfit/{ => gui}/plotting.py | 29 +-
pycorrfit/gui/threaded_progress.py | 256 ++++++
pycorrfit/{ => gui}/tools/__init__.py | 0
pycorrfit/{ => gui}/tools/average.py | 4 +-
pycorrfit/{ => gui}/tools/background.py | 7 +-
pycorrfit/{ => gui}/tools/batchcontrol.py | 104 ++-
pycorrfit/{ => gui}/tools/chooseimport.py | 2 +-
pycorrfit/{ => gui}/tools/comment.py | 0
pycorrfit/{ => gui}/tools/datarange.py | 0
pycorrfit/{ => gui}/tools/example.py | 0
pycorrfit/{ => gui}/tools/globalfit.py | 3 +-
pycorrfit/{ => gui}/tools/info.py | 14 +-
pycorrfit/{ => gui}/tools/overlaycurves.py | 0
pycorrfit/{ => gui}/tools/parmrange.py | 19 +-
pycorrfit/{ => gui}/tools/plotexport.py | 0
pycorrfit/{ => gui}/tools/simulation.py | 3 +-
pycorrfit/{ => gui}/tools/statistics.py | 5 +-
pycorrfit/{ => gui}/tools/trace.py | 0
pycorrfit/{ => gui}/usermodel.py | 5 +-
pycorrfit/{ => gui}/wxutils.py | 0
pycorrfit/meta.py | 74 ++
pycorrfit/models/MODEL_classic_gaussian_2D.py | 288 -------
pycorrfit/models/MODEL_classic_gaussian_3D.py | 302 -------
pycorrfit/models/MODEL_classic_gaussian_3D2D.py | 156 ----
pycorrfit/models/MODEL_classic_gaussian_TT3D3D.py | 178 ----
pycorrfit/models/__init__.py | 228 +----
pycorrfit/models/classes.py | 155 ++++
pycorrfit/models/control.py | 224 +++++
pycorrfit/models/cp_confocal.py | 15 +
pycorrfit/models/cp_mix.py | 92 ++
pycorrfit/models/cp_triplet.py | 15 +
pycorrfit/models/model_confocal_2d.py | 67 ++
pycorrfit/models/model_confocal_2d_2d.py | 116 +++
pycorrfit/models/model_confocal_3d.py | 77 ++
pycorrfit/models/model_confocal_3d_2d.py | 119 +++
pycorrfit/models/model_confocal_3d_3d.py | 116 +++
pycorrfit/models/model_confocal_t_2d.py | 95 +++
pycorrfit/models/model_confocal_t_2d_2d.py | 151 ++++
pycorrfit/models/model_confocal_t_3d.py | 97 +++
pycorrfit/models/model_confocal_t_3d_2d.py | 159 ++++
pycorrfit/models/model_confocal_t_3d_3d.py | 155 ++++
pycorrfit/models/model_confocal_t_3d_3d_2d.py | 189 +++++
pycorrfit/models/model_confocal_t_3d_3d_3d.py | 190 +++++
pycorrfit/models/model_confocal_tt_2d_2d.py | 167 ++++
pycorrfit/models/model_confocal_tt_3d_2d.py | 177 ++++
pycorrfit/models/model_confocal_tt_3d_3d.py | 176 ++++
pycorrfit/openfile.py | 64 +-
pycorrfit/readfiles/__init__.py | 35 +-
pycorrfit/readfiles/read_SIN_correlator_com.py | 323 ++++---
pycorrfit/trace.py | 109 +++
setup.cfg | 3 +
setup.py | 33 +-
tests/README.md | 8 +-
tests/data_file_dl.py | 175 ++++
tests/test_constraints.py | 98 +++
tests/test_file_formats.py | 41 +
tests/test_fit_model_gaussian.py | 276 +++++-
tests/test_fit_models.py | 29 +-
tests/test_global_fit.py | 4 +-
tests/test_simple.py | 3 +-
86 files changed, 5045 insertions(+), 2371 deletions(-)
delete mode 100644 PKG-INFO
delete mode 100644 README.md
create mode 100644 README.rst
delete mode 100644 Readme.txt
delete mode 100644 examples/sample_sessions/CSFCS_DiO-in-DOPC.pcfs.REMOVED.git-id
create mode 100644 pycorrfit/correlation.py
rename pycorrfit/{fcs_data_set.py => fit.py} (52%)
create mode 100644 pycorrfit/gui/__init__.py
rename pycorrfit/{ => gui}/doc.py (77%)
rename pycorrfit/{ => gui}/edclasses.py (100%)
rename pycorrfit/{ => gui}/frontend.py (98%)
rename pycorrfit/{ => gui}/icon.py (100%)
rename pycorrfit/{ => gui}/main.py (100%)
rename pycorrfit/{ => gui}/misc.py (93%)
rename pycorrfit/{ => gui}/page.py (96%)
rename pycorrfit/{ => gui}/plotting.py (94%)
create mode 100644 pycorrfit/gui/threaded_progress.py
rename pycorrfit/{ => gui}/tools/__init__.py (100%)
rename pycorrfit/{ => gui}/tools/average.py (99%)
rename pycorrfit/{ => gui}/tools/background.py (99%)
rename pycorrfit/{ => gui}/tools/batchcontrol.py (77%)
rename pycorrfit/{ => gui}/tools/chooseimport.py (99%)
rename pycorrfit/{ => gui}/tools/comment.py (100%)
rename pycorrfit/{ => gui}/tools/datarange.py (100%)
rename pycorrfit/{ => gui}/tools/example.py (100%)
rename pycorrfit/{ => gui}/tools/globalfit.py (99%)
rename pycorrfit/{ => gui}/tools/info.py (97%)
rename pycorrfit/{ => gui}/tools/overlaycurves.py (100%)
rename pycorrfit/{ => gui}/tools/parmrange.py (98%)
rename pycorrfit/{ => gui}/tools/plotexport.py (100%)
rename pycorrfit/{ => gui}/tools/simulation.py (99%)
rename pycorrfit/{ => gui}/tools/statistics.py (99%)
rename pycorrfit/{ => gui}/tools/trace.py (100%)
rename pycorrfit/{ => gui}/usermodel.py (98%)
rename pycorrfit/{ => gui}/wxutils.py (100%)
create mode 100644 pycorrfit/meta.py
delete mode 100755 pycorrfit/models/MODEL_classic_gaussian_2D.py
delete mode 100755 pycorrfit/models/MODEL_classic_gaussian_3D.py
delete mode 100755 pycorrfit/models/MODEL_classic_gaussian_3D2D.py
delete mode 100644 pycorrfit/models/MODEL_classic_gaussian_TT3D3D.py
create mode 100644 pycorrfit/models/classes.py
create mode 100644 pycorrfit/models/control.py
create mode 100644 pycorrfit/models/cp_confocal.py
create mode 100644 pycorrfit/models/cp_mix.py
create mode 100644 pycorrfit/models/cp_triplet.py
create mode 100644 pycorrfit/models/model_confocal_2d.py
create mode 100644 pycorrfit/models/model_confocal_2d_2d.py
create mode 100644 pycorrfit/models/model_confocal_3d.py
create mode 100644 pycorrfit/models/model_confocal_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_3d_3d.py
create mode 100644 pycorrfit/models/model_confocal_t_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_2d_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_3d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_3d_3d.py
create mode 100644 pycorrfit/models/model_confocal_tt_2d_2d.py
create mode 100644 pycorrfit/models/model_confocal_tt_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_tt_3d_3d.py
create mode 100644 pycorrfit/trace.py
create mode 100644 tests/data_file_dl.py
create mode 100644 tests/test_constraints.py
create mode 100644 tests/test_file_formats.py
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pycorrfit.git
More information about the debian-med-commit
mailing list