[med-svn] [pycorrfit] branch upstream updated (b05cce7 -> 8e4201e)
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Fri Jul 22 14:23:45 UTC 2016
This is an automated email from the git hooks/post-receive script.
malex-guest pushed a change to branch upstream
in repository pycorrfit.
from b05cce7 Imported Upstream version 0.9.5+dfsg
new 3be6b5d Imported Upstream version 0.9.8+dfsg
new 8e4201e Imported Upstream version 0.9.9+dfsg
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog.txt | 37 +-
MANIFEST.in | 3 +-
PKG-INFO | 33 -
README.md | 28 -
README.rst | 101 +++
Readme.txt | 28 -
doc/PyCorrFit_doc.tex | 2 +-
doc/PyCorrFit_doc_content.tex | 33 +-
.../CSFCS_DiO-in-DOPC.pcfs.REMOVED.git-id | 1 -
pycorrfit/__init__.py | 12 +-
pycorrfit/__main__.py | 8 +-
pycorrfit/correlation.py | 550 ++++++++++++
pycorrfit/{fcs_data_set.py => fit.py} | 923 +++++----------------
pycorrfit/gui/__init__.py | 0
pycorrfit/{ => gui}/doc.py | 48 +-
pycorrfit/{ => gui}/edclasses.py | 0
pycorrfit/{ => gui}/frontend.py | 57 +-
pycorrfit/{ => gui}/icon.py | 0
pycorrfit/{ => gui}/main.py | 0
pycorrfit/{ => gui}/misc.py | 19 -
pycorrfit/{ => gui}/page.py | 62 +-
pycorrfit/{ => gui}/plotting.py | 29 +-
pycorrfit/gui/threaded_progress.py | 256 ++++++
pycorrfit/{ => gui}/tools/__init__.py | 0
pycorrfit/{ => gui}/tools/average.py | 4 +-
pycorrfit/{ => gui}/tools/background.py | 7 +-
pycorrfit/{ => gui}/tools/batchcontrol.py | 104 ++-
pycorrfit/{ => gui}/tools/chooseimport.py | 2 +-
pycorrfit/{ => gui}/tools/comment.py | 0
pycorrfit/{ => gui}/tools/datarange.py | 0
pycorrfit/{ => gui}/tools/example.py | 0
pycorrfit/{ => gui}/tools/globalfit.py | 3 +-
pycorrfit/{ => gui}/tools/info.py | 14 +-
pycorrfit/{ => gui}/tools/overlaycurves.py | 0
pycorrfit/{ => gui}/tools/parmrange.py | 19 +-
pycorrfit/{ => gui}/tools/plotexport.py | 0
pycorrfit/{ => gui}/tools/simulation.py | 3 +-
pycorrfit/{ => gui}/tools/statistics.py | 5 +-
pycorrfit/{ => gui}/tools/trace.py | 0
pycorrfit/{ => gui}/usermodel.py | 5 +-
pycorrfit/{ => gui}/wxutils.py | 0
pycorrfit/meta.py | 74 ++
pycorrfit/models/MODEL_classic_gaussian_2D.py | 288 -------
pycorrfit/models/MODEL_classic_gaussian_3D.py | 302 -------
pycorrfit/models/MODEL_classic_gaussian_3D2D.py | 156 ----
pycorrfit/models/MODEL_classic_gaussian_TT3D3D.py | 178 ----
pycorrfit/models/__init__.py | 228 +----
pycorrfit/models/classes.py | 155 ++++
pycorrfit/models/control.py | 224 +++++
pycorrfit/models/cp_confocal.py | 15 +
pycorrfit/models/cp_mix.py | 92 ++
pycorrfit/models/cp_triplet.py | 15 +
pycorrfit/models/model_confocal_2d.py | 67 ++
pycorrfit/models/model_confocal_2d_2d.py | 116 +++
pycorrfit/models/model_confocal_3d.py | 77 ++
pycorrfit/models/model_confocal_3d_2d.py | 119 +++
pycorrfit/models/model_confocal_3d_3d.py | 116 +++
pycorrfit/models/model_confocal_t_2d.py | 95 +++
pycorrfit/models/model_confocal_t_2d_2d.py | 151 ++++
pycorrfit/models/model_confocal_t_3d.py | 97 +++
pycorrfit/models/model_confocal_t_3d_2d.py | 159 ++++
pycorrfit/models/model_confocal_t_3d_3d.py | 155 ++++
pycorrfit/models/model_confocal_t_3d_3d_2d.py | 189 +++++
pycorrfit/models/model_confocal_t_3d_3d_3d.py | 190 +++++
pycorrfit/models/model_confocal_tt_2d_2d.py | 167 ++++
pycorrfit/models/model_confocal_tt_3d_2d.py | 177 ++++
pycorrfit/models/model_confocal_tt_3d_3d.py | 176 ++++
pycorrfit/openfile.py | 64 +-
pycorrfit/readfiles/__init__.py | 35 +-
pycorrfit/readfiles/read_SIN_correlator_com.py | 323 ++++---
pycorrfit/trace.py | 109 +++
setup.cfg | 3 +
setup.py | 33 +-
tests/README.md | 8 +-
tests/data_file_dl.py | 175 ++++
tests/test_constraints.py | 98 +++
tests/test_file_formats.py | 41 +
tests/test_fit_model_gaussian.py | 276 +++++-
tests/test_fit_models.py | 29 +-
tests/test_global_fit.py | 4 +-
tests/test_simple.py | 3 +-
81 files changed, 5017 insertions(+), 2358 deletions(-)
delete mode 100644 PKG-INFO
delete mode 100644 README.md
create mode 100644 README.rst
delete mode 100644 Readme.txt
delete mode 100644 examples/sample_sessions/CSFCS_DiO-in-DOPC.pcfs.REMOVED.git-id
create mode 100644 pycorrfit/correlation.py
rename pycorrfit/{fcs_data_set.py => fit.py} (52%)
create mode 100644 pycorrfit/gui/__init__.py
rename pycorrfit/{ => gui}/doc.py (77%)
rename pycorrfit/{ => gui}/edclasses.py (100%)
rename pycorrfit/{ => gui}/frontend.py (98%)
rename pycorrfit/{ => gui}/icon.py (100%)
rename pycorrfit/{ => gui}/main.py (100%)
rename pycorrfit/{ => gui}/misc.py (93%)
rename pycorrfit/{ => gui}/page.py (96%)
rename pycorrfit/{ => gui}/plotting.py (94%)
create mode 100644 pycorrfit/gui/threaded_progress.py
rename pycorrfit/{ => gui}/tools/__init__.py (100%)
rename pycorrfit/{ => gui}/tools/average.py (99%)
rename pycorrfit/{ => gui}/tools/background.py (99%)
rename pycorrfit/{ => gui}/tools/batchcontrol.py (77%)
rename pycorrfit/{ => gui}/tools/chooseimport.py (99%)
rename pycorrfit/{ => gui}/tools/comment.py (100%)
rename pycorrfit/{ => gui}/tools/datarange.py (100%)
rename pycorrfit/{ => gui}/tools/example.py (100%)
rename pycorrfit/{ => gui}/tools/globalfit.py (99%)
rename pycorrfit/{ => gui}/tools/info.py (97%)
rename pycorrfit/{ => gui}/tools/overlaycurves.py (100%)
rename pycorrfit/{ => gui}/tools/parmrange.py (98%)
rename pycorrfit/{ => gui}/tools/plotexport.py (100%)
rename pycorrfit/{ => gui}/tools/simulation.py (99%)
rename pycorrfit/{ => gui}/tools/statistics.py (99%)
rename pycorrfit/{ => gui}/tools/trace.py (100%)
rename pycorrfit/{ => gui}/usermodel.py (98%)
rename pycorrfit/{ => gui}/wxutils.py (100%)
create mode 100644 pycorrfit/meta.py
delete mode 100755 pycorrfit/models/MODEL_classic_gaussian_2D.py
delete mode 100755 pycorrfit/models/MODEL_classic_gaussian_3D.py
delete mode 100755 pycorrfit/models/MODEL_classic_gaussian_3D2D.py
delete mode 100644 pycorrfit/models/MODEL_classic_gaussian_TT3D3D.py
create mode 100644 pycorrfit/models/classes.py
create mode 100644 pycorrfit/models/control.py
create mode 100644 pycorrfit/models/cp_confocal.py
create mode 100644 pycorrfit/models/cp_mix.py
create mode 100644 pycorrfit/models/cp_triplet.py
create mode 100644 pycorrfit/models/model_confocal_2d.py
create mode 100644 pycorrfit/models/model_confocal_2d_2d.py
create mode 100644 pycorrfit/models/model_confocal_3d.py
create mode 100644 pycorrfit/models/model_confocal_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_3d_3d.py
create mode 100644 pycorrfit/models/model_confocal_t_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_2d_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_3d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_t_3d_3d_3d.py
create mode 100644 pycorrfit/models/model_confocal_tt_2d_2d.py
create mode 100644 pycorrfit/models/model_confocal_tt_3d_2d.py
create mode 100644 pycorrfit/models/model_confocal_tt_3d_3d.py
create mode 100644 pycorrfit/trace.py
create mode 100644 tests/data_file_dl.py
create mode 100644 tests/test_constraints.py
create mode 100644 tests/test_file_formats.py
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