[med-svn] [seqan] branch master updated (7fe81c3 -> bb542af)
Andreas Tille
tille at debian.org
Tue Jul 26 07:29:20 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository seqan.
from 7fe81c3 Revert "More spelling issues"
new b16ef26 Revert "Imported Upstream version 2.0.1+dfsg"
new faf4282 Revert "Remove swapfile right from the tarball rather than via patch"
new e6469cd Revert "lintian override for false positive"
new b41426d Revert "Fix symlinks"
new 2c357c4 Revert "Location of file has changed"
new af7f194 Revert "Fix string quoting"
new 5732a80 Revert "Dox target does nothing and no *.html files will be created at all"
new 9400170 Revert "Depete outdated comment"
new cf786e8 Revert "Symlink to binaries only if these are part of the binary distribution"
new e2701b4 Revert "Imported Upstream version 2.0.1+dfsg"
new c6433c2 Revert "New minor upstream release"
new 2338ecb Revert "Rename seqan-doc doc-base document name"
new bd30072 Revert "Fix erroneous duplication of Section in seqan-apps"
new bb542af Revert "Add swp removal patch to d/source/include-binaries"
The 14 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGELOG.rst | 82 -
apps/alf/CMakeLists.txt | 2 +-
apps/bs_tools/CMakeLists.txt | 2 +-
apps/bs_tools/tests/run_tests.py | 31 +-
apps/dfi/CMakeLists.txt | 2 +-
apps/fiona/CMakeLists.txt | 2 +-
apps/fx_tools/CMakeLists.txt | 2 +-
apps/fx_tools/fx_bam_coverage.cpp | 34 +-
apps/gustaf/CMakeLists.txt | 2 +-
apps/insegt/CMakeLists.txt | 2 +-
apps/mason2/CMakeLists.txt | 2 +-
apps/mason2/mason_simulator.cpp | 83 +-
apps/mason2/simulate_illumina.cpp | 14 +-
apps/mason2/simulate_sanger.cpp | 14 +-
apps/mason2/tests/simulator.out1.sam | 52 +-
apps/mason2/tests/simulator.out2.sam | 100 +-
apps/mason2/tests/simulator.out4.sam | 26 +-
apps/mason2/tests/simulator.out7.sam | 50 +-
apps/mason2/tests/simulator.out8.sam | 1220 +++++++--------
apps/micro_razers/CMakeLists.txt | 2 +-
apps/ngs_roi/CMakeLists.txt | 2 +-
apps/pair_align/CMakeLists.txt | 8 +-
apps/param_chooser/CMakeLists.txt | 2 +-
apps/rabema/CMakeLists.txt | 2 +-
apps/rabema/curve_smoothing.h | 2 +-
apps/rabema/rabema_build_gold_standard.cpp | 2 +-
apps/razers/CMakeLists.txt | 2 +-
apps/razers2/CMakeLists.txt | 2 +-
apps/razers2/outputFormat.h | 4 +-
apps/razers3/CMakeLists.txt | 2 +-
apps/razers3/README | 82 +-
apps/rep_sep/CMakeLists.txt | 2 +-
apps/sak/CMakeLists.txt | 2 +-
apps/sam2matrix/CMakeLists.txt | 2 +-
apps/samcat/CMakeLists.txt | 2 +-
apps/searchjoin/CMakeLists.txt | 2 +-
apps/seqan_flexbar/CMakeLists.txt | 2 +-
apps/seqan_tcoffee/CMakeLists.txt | 2 +-
apps/seqan_tcoffee/tests/1aab.i.fasta | 110 +-
apps/seqan_tcoffee/tests/1ad2.i.fasta | 110 +-
apps/seqan_tcoffee/tests/2trx.i.fasta | 110 +-
apps/seqcons/CMakeLists.txt | 2 +-
apps/seqcons2/CMakeLists.txt | 2 +-
apps/sgip/CMakeLists.txt | 2 +-
apps/snp_store/CMakeLists.txt | 2 +-
apps/splazers/CMakeLists.txt | 7 +-
apps/splazers/razers_spliced.h | 4 +-
apps/stellar/CMakeLists.txt | 2 +-
apps/stellar/stellar.cpp | 7 +-
apps/tree_recon/CMakeLists.txt | 2 +-
apps/yara/CMakeLists.txt | 8 +-
apps/yara/bits_context.h | 4 +-
apps/yara/mapper.cpp | 11 +-
apps/yara/misc_options.h | 2 +-
apps/yara/tests/gold/adeno-reads_1.t1.sam | 2 +-
debian/changelog | 5 +-
debian/control | 1 +
debian/copyright | 3 +-
debian/patches/0001-Remove-.swp-from-source.patch | Bin 0 -> 41654 bytes
debian/patches/series | 2 +-
debian/rules | 53 +-
debian/seqan-apps.links | 21 +
debian/seqan-apps.lintian-overrides | 2 -
debian/seqan-doc.doc-base | 2 +-
debian/source/include-binaries | 1 -
demos/{dox => }/align/align.cpp | 0
demos/{dox => }/align/align.cpp.stdout | 0
demos/align/compute_alignment_stats.cpp | 66 +
demos/align/compute_alignment_stats.cpp.stdout | 50 +
demos/{dox => }/align/gaps_example.cpp | 0
demos/{dox => }/align/gaps_example.cpp.stdout | 0
demos/{dox => }/align/global_alignment_banded.cpp | 0
.../align/global_alignment_banded.cpp.stdout | 0
.../{dox => }/align/global_alignment_unbanded.cpp | 0
.../align/global_alignment_unbanded.cpp.stdout | 0
demos/{dox => }/align/integrate_align.cpp | 0
demos/{dox => }/align/integrate_align.cpp.stdout | 0
demos/{dox => }/align_extend/extend_alignment.cpp | 0
.../align_extend/extend_alignment.cpp.stdout | 0
demos/align_gaps_clipping.cpp | 74 +
.../align_profile/profile_seq_frac_score.cpp | 0
.../{dox => }/align_profile/profile_seq_score.cpp | 0
demos/{dox => }/align_split/split_alignment.cpp | 0
.../align_split/split_alignment.cpp.stdout | 0
demos/alignment.cpp | 51 +
demos/alignment_local.cpp | 91 ++
demos/allocator.cpp | 28 +
demos/{unassigned_or_unused => }/alphabet.cpp | 0
.../annotation_converter.cpp | 0
demos/{unassigned_or_unused => }/arg_align.README | 0
demos/{unassigned_or_unused => }/arg_align.cpp | 0
demos/{dox => }/arg_parse/argument_parser.cpp | 0
demos/{dox => }/bam_io/bam_file_in.cpp | 0
demos/bam_io/bam_tags_dict.cpp | 36 +
demos/{dox => }/bam_io/bam_tags_dict.cpp.stdout | 0
demos/bam_library_size.cpp | 271 ++++
.../bam_print_alignments.cpp | 0
demos/{unassigned_or_unused => }/bamutil.cpp | 0
demos/basic/enable_if.cpp | 96 ++
demos/{dox => }/basic/metaprogramming_control.cpp | 0
demos/{dox => }/basic/metaprogramming_logic.cpp | 0
demos/{dox => }/basic/metaprogramming_math.cpp | 0
demos/{dox => }/basic/metaprogramming_switch.cpp | 0
demos/{dox => }/basic/simple_type_construction.cpp | 0
.../bed_stream_read.cpp} | 0
demos/benchmark_stream.cpp | 422 +++++
.../benchmark_stream_write.cpp | 0
demos/{dox => }/consensus/consensus_alignment.cpp | 0
.../consensus/consensus_alignment.cpp.stdout | 0
demos/{unassigned_or_unused => }/cuda/count.cu | 0
demos/{unassigned_or_unused => }/cuda/hello.cu | 0
demos/{unassigned_or_unused => }/cuda/mmap.cu | 0
demos/{dox/modifier => }/cyclic_shape.cpp | 0
demos/{dox/modifier => }/cyclic_shape.cpp.stdout | 0
demos/{dox/modifier => }/cyclic_shape_snippets.cpp | 0
demos/dox/align/compute_alignment_stats.cpp | 65 -
demos/dox/align/compute_alignment_stats.cpp.stdout | 52 -
demos/dox/bam_io/bam_tags_dict.cpp | 36 -
demos/dox/basic/enable_if.cpp | 96 --
.../graph_algorithms/all_pairs_shortest_path.cpp | 43 -
.../graph_algorithms/bellman_ford_algorithm.cpp | 46 -
.../dox/graph_algorithms/breadth_first_search.cpp | 52 -
demos/dox/graph_algorithms/dag_shortest_path.cpp | 43 -
demos/dox/graph_algorithms/depth_first_search.cpp | 50 -
demos/dox/graph_algorithms/dijkstra.cpp | 71 -
.../graph_algorithms/floyd_warshall_algorithm.cpp | 42 -
.../graph_algorithms/ford_fulkerson_algorithm.cpp | 40 -
demos/dox/graph_algorithms/kruskals_algorithm.cpp | 48 -
demos/dox/graph_algorithms/prims_algorithm.cpp | 46 -
.../strongly_connected_components.cpp | 41 -
demos/dox/graph_algorithms/topological_sort.cpp | 42 -
demos/dox/graph_algorithms/transitive_closure.cpp | 34 -
demos/dox/index/length_countSequences.cpp | 26 -
demos/dox/index/open_save.cpp | 27 -
demos/dox/parallel/queue_example.cpp | 30 -
demos/dox/random/random.cpp | 39 -
demos/dox/seq_io/fai_index_example.cpp | 48 -
demos/dox/sequence/segment.cpp | 120 --
demos/dox/stream/lexical_cast.cpp | 53 -
demos/{unassigned_or_unused => }/ecoln.out | 0
demos/{unassigned_or_unused => }/file_format.cpp | 0
.../{unassigned_or_unused => }/file_readwrite.cpp | 0
demos/{unassigned_or_unused => }/file_speed.cpp | 0
demos/{unassigned_or_unused => }/filter_sam.cpp | 0
demos/{dox => }/find/finder_aho_corasick.cpp | 0
demos/{dox => }/find/finder_index.cpp | 0
demos/{dox => }/find/finder_index.cpp.stdout | 0
demos/{dox => }/find/finder_online.cpp | 0
demos/{dox => }/find/finder_online.cpp.stdout | 0
demos/find_approx.cpp | 45 +
demos/find_exact.cpp | 35 +
demos/{unassigned_or_unused => }/find_wild.cpp | 0
demos/{unassigned_or_unused => }/gff2gtf.cpp | 0
.../gff_stream_read.cpp} | 0
.../graph_types => graph}/graph_algo_dijkstra.cpp | 0
.../graph_algo_dijkstra.cpp.stdout | 0
demos/graph_algorithms/all_pairs_shortest_path.cpp | 44 +
.../all_pairs_shortest_path.cpp.stdout | 0
demos/graph_algorithms/bellman_ford_algorithm.cpp | 47 +
.../bellman_ford_algorithm.cpp.stdout | 0
demos/graph_algorithms/breadth_first_search.cpp | 53 +
.../breadth_first_search.cpp.stdout | 0
demos/graph_algorithms/dag_shortest_path.cpp | 44 +
.../graph_algorithms/dag_shortest_path.cpp.stdout | 0
demos/graph_algorithms/depth_first_search.cpp | 51 +
.../graph_algorithms/depth_first_search.cpp.stdout | 0
demos/graph_algorithms/dijkstra.cpp | 72 +
.../{dox => }/graph_algorithms/dijkstra.cpp.stdout | 0
.../graph_algorithms/floyd_warshall_algorithm.cpp | 43 +
.../floyd_warshall_algorithm.cpp.stdout | 0
.../graph_algorithms/ford_fulkerson_algorithm.cpp | 41 +
.../ford_fulkerson_algorithm.cpp.stdout | 0
.../heaviest_increasing_subsequence.cpp | 0
demos/graph_algorithms/kruskals_algorithm.cpp | 49 +
.../graph_algorithms/kruskals_algorithm.cpp.stdout | 0
.../longest_common_subsequence.cpp | 0
.../longest_increasing_subsequence.cpp | 0
demos/graph_algorithms/prims_algorithm.cpp | 47 +
.../graph_algorithms/prims_algorithm.cpp.stdout | 0
.../strongly_connected_components.cpp | 42 +
.../strongly_connected_components.cpp.stdout | 0
demos/graph_algorithms/topological_sort.cpp | 43 +
.../graph_algorithms/topological_sort.cpp.stdout | 0
demos/graph_algorithms/transitive_closure.cpp | 35 +
.../graph_algorithms/transitive_closure.cpp.stdout | 0
demos/{dox => }/graph_align/graph_align.cpp | 0
demos/graph_hmm.cpp | 98 ++
demos/graph_hmm_silent.cpp | 118 ++
demos/howto/align_gaps_clipping.cpp | 72 -
demos/howto/scores/init_score.cpp | 83 +-
demos/howto/scores/init_score.cpp.stdout | 22 -
demos/howto/scores/load_score.cpp | 11 +-
demos/howto/scores/load_score.cpp.stdout | 6 -
...x_textAt_indexText_saAt_indexRequire.cpp.stdout | 0
demos/{dox => }/index/find_repeats.cpp | 0
.../index_begin_atEnd_representative.cpp} | 0
.../index_begin_atEnd_representative.cpp.stdout} | 0
.../index_begin_atEnd_representative_bottomUp.cpp} | 0
...egin_range_goDown_representative_repLength.cpp} | 0
.../counting.cpp => index/index_counting.cpp} | 0
.../index_counting.cpp.stdout} | 0
.../index/finder.cpp => index/index_finder.cpp} | 0
.../index_finder.cpp.stdout} | 0
...getOccurrences_getFrequency_range_getFibre.cpp} | 0
...rrences_getFrequency_range_getFibre.cpp.stdout} | 0
.../iterator.cpp => index/index_iterator.cpp} | 0
.../index_iterator.cpp.stdout} | 0
.../index_iterator_short.cpp} | 0
.../index_iterator_short.cpp.stdout} | 0
demos/index/index_length_countSequences.cpp | 27 +
.../index_length_countSequences.cpp.stdout} | 0
.../{dox/index/mummy.cpp => index/index_mummy.cpp} | 0
.../index_mummy.cpp.stdout} | 0
demos/{dox/index/mums.cpp => index/index_mums.cpp} | 0
.../index_node_predicate.cpp} | 0
demos/index/index_open_save.cpp | 28 +
.../index_open_save.cpp.stdout} | 0
demos/index/index_qgram.cpp | 16 +
.../index_sufarray.cpp | 0
.../index_sufarray.cpp.stdout} | 0
.../index_supermaxrepeats.cpp} | 0
.../index_textAt_indexText_saAt_indexRequire.cpp} | 0
..._textAt_indexText_saAt_indexRequire.cpp.stdout} | 0
demos/{dox => }/index/ref.fa | 0
.../index/UNUSED_shape.cpp => index/shape.cpp} | 0
.../UNUSED_shape_hash.cpp => index/shape_hash.cpp} | 0
demos/{dox => }/index/shape_hash_init.cpp | 0
.../shape_hash_next.cpp} | 0
demos/index_counting.cpp | 36 +
demos/{unassigned_or_unused => }/index_find.cpp | 0
.../index_find_stringset.cpp | 0
demos/{unassigned_or_unused => }/index_lcp.cpp | 0
.../index/maxrepeats.cpp => index_maxrepeats.cpp} | 0
demos/{unassigned_or_unused => }/index_mums.cpp | 0
.../index_node_predicate.cpp | 0
.../index_qgram_counts.cpp | 0
.../{dox/index/sufarray.cpp => index_sufarray.cpp} | 0
.../index_supermaxrepeats.cpp | 0
demos/input_output/example.fa | 4 +
demos/input_output/seqfile_reader.cpp | 27 +
demos/input_output/seqfile_reader.cpp.stdout | 2 +
.../simple_rna_seq => }/interval_tree.cpp | 0
demos/{unassigned_or_unused => }/iterator.cpp | 0
demos/{unassigned_or_unused => }/knime_node.cpp | 0
demos/{unassigned_or_unused => }/lagan1.fasta | 0
demos/{unassigned_or_unused => }/lagan2.fasta | 0
demos/{dox => }/misc/enumerate_strings.cpp | 0
demos/{dox => }/misc/enumerate_strings.cpp.stdout | 0
demos/{dox => }/misc/get_terminal_size.cpp | 0
demos/{dox => }/misc/interval_tree_example.cpp | 0
demos/{dox => }/misc/name_store_cache.cpp | 0
demos/{dox => }/misc/name_store_cache.cpp.stdout | 0
demos/{dox => }/modifier/modified_string.cpp | 0
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.../modifier/modified_string_mod_view.cpp | 0
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.../modifier_modreverse.cpp | 0
.../modifier_modview.cpp | 0
.../{unassigned_or_unused => }/modifier_nested.cpp | 0
demos/parallel/queue_example.cpp | 30 +
demos/{dox => }/parallel/queue_example.cpp.stdout | 0
demos/{dox => }/parallel/splitter_example.cpp | 0
.../{dox => }/parallel/splitter_example.cpp.stdout | 0
.../parse_lm_stellar.cpp | 0
demos/{dox => }/pipe/pool_sorter.cpp | 0
demos/random/random.cpp | 42 +
.../{unassigned_or_unused => }/rooted_iterator.cpp | 0
demos/sam2svg.cpp | 222 +++
demos/{unassigned_or_unused => }/sample_seqs.cpp | 0
demos/{dox => }/score/score.cpp | 0
demos/{dox => }/score/score.cpp.stdout | 0
demos/{unassigned_or_unused => }/seeds.cpp | 0
demos/{dox => }/seeds/seeds_add_seed.cpp | 0
demos/{dox => }/seeds/seeds_chaining.cpp | 0
demos/{dox => }/seeds/seeds_chaining.cpp.stdout | 0
demos/{dox => }/seeds/seeds_extension.cpp | 0
demos/{dox => }/seeds/seeds_extension.cpp.stdout | 0
.../segmentalignment.cpp | 0
demos/{dox => }/seq_io/example.fa | 0
demos/{dox => }/seq_io/example.fa.fai | 0
demos/seq_io/fai_index_example.cpp | 49 +
.../{dox => }/seq_io/fai_index_example.cpp.stdout | 0
demos/seq_io/sequence_stream_read.cpp | 68 +
demos/seq_io/sequence_stream_read.cpp.stdout | 1 +
demos/seq_io/sequence_stream_write.cpp | 17 +
.../UNUSED_infix.cpp => sequence/infix.cpp} | 0
.../UNUSED_prefix.cpp => sequence/prefix.cpp} | 0
demos/sequence/segment.cpp | 98 ++
demos/{dox => }/sequence/string.cpp | 0
demos/{dox => }/sequence/string2.cpp | 0
demos/{dox => }/sequence/string2.cpp.stdout | 0
demos/{dox => }/sequence/stringset.cpp | 0
demos/{dox => }/sequence/stringset.cpp.stdout | 0
.../UNUSED_suffix.cpp => sequence/suffix.cpp} | 0
demos/{unassigned_or_unused => }/sequence_1.fa | 0
demos/{unassigned_or_unused => }/sequence_2.fa | 0
.../{unassigned_or_unused => }/sequence_length.cpp | 0
.../soft_to_hard_masking.cpp | 0
demos/{dox => }/statistics/background.fa | 0
demos/{dox => }/statistics/build_markov_model.cpp | 0
demos/{dox => }/statistics/load_markov_model.cpp | 0
demos/{dox => }/statistics/zscore_example_mm.3 | 0
demos/{dox => }/statistics/zscore_human_mm.3 | 0
demos/{dox => }/store/store_example.cpp | 0
demos/stream/lexical_cast.cpp | 55 +
demos/{dox => }/stream/lexical_cast.cpp.stdout | 0
.../tutorial/a_first_example/basic_code.cpp.stdout | 1 -
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.../a_first_example/final_result.cpp.stdout | 10 -
.../tutorial/a_first_example/solution_1.cpp.stdout | 1 -
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.../tutorial/a_first_example/solution_3.cpp.stdout | 1 -
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.../tutorial/a_first_example/solution_5.cpp.stdout | 3 -
.../tutorial/a_first_example/solution_6.cpp.stdout | 10 -
.../alignment_representation/align.cpp.stdout | 42 -
.../align_assignment1.cpp.stdout | 1 -
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demos/tutorial/alignments/CMakeLists.txt | 5 +
.../align.cpp => alignments/alignment2_align.cpp} | 0
.../alignment_align_assignment1.cpp} | 0
.../alignment_banded.cpp | 0
.../tutorial/alignments}/alignment_example.png | Bin
demos/tutorial/alignments/alignment_gaps.cpp | 58 +
.../alignment_global_assignment1.cpp | 0
.../alignment_global_assignment2.cpp | 0
.../alignment_global_assignment3.cpp | 0
.../alignment_global_assignment4_part1.cpp | 40 +
.../alignment_global_assignment4_part2.cpp | 50 +
.../alignment_global_overlap.cpp | 0
.../alignment_global_specialised.cpp | 0
.../alignment_global_standard.cpp | 0
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.../alignments/alignment_local_waterman_eggert.cpp | 32 +
.../msa.cpp => alignments/alignment_msa.cpp} | 0
.../alignment_msa.cpp.stdout} | 0
.../alignment_msa_assignment1.cpp} | 0
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.../alignment_msa_consensus.cpp} | 0
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.../alignments/alignment_pairwise_global.cpp | 55 +
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.../pairwise_sequence_alignment_assignment5.cpp | 136 ++
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...irwise_sequence_alignment_assignment5_step6.cpp | 124 ++
.../alphabet_assignment_1_solution.cpp.stdout | Bin 183 -> 0 bytes
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.../annotation_store/assignment_4_solution.cpp | 50 +
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demos/tutorial/bam_io/example1.cpp | 27 +
demos/tutorial/bam_io/example2.cpp | 21 +
demos/tutorial/bam_io/example3.cpp | 32 +
demos/tutorial/bam_io/example7.cpp | 100 ++
demos/tutorial/bam_io/solution1.cpp | 39 +
demos/tutorial/bam_io/solution2.cpp | 41 +
demos/tutorial/bam_io/solution3.cpp | 44 +
demos/tutorial/bam_io/solution4.cpp | 67 +
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demos/tutorial/bam_io/solution6.cpp | 40 +
demos/tutorial/bam_io/solution7.cpp | 43 +
demos/tutorial/base_io/example1.cpp | 38 +
demos/tutorial/base_io/solution1.cpp | 57 +
demos/tutorial/base_io/solution2.cpp | 65 +
demos/tutorial/base_io/solution3.cpp | 73 +
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manual/source/Tutorial/AlignmentRepresentation.rst | 30 +-
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create mode 100644 demos/input_output/seqfile_reader.cpp
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rename demos/{unassigned_or_unused/tutorials_custim_io => tutorial/custom_io}/parse_blastn.cpp (100%)
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create mode 100644 include/seqan/stream/zipstream/bgzfstream_impl.h
create mode 100644 include/seqan/stream/zipstream/bzip2stream.h
create mode 100644 include/seqan/stream/zipstream/bzip2stream_impl.h
create mode 100644 include/seqan/stream/zipstream/zipstream.h
create mode 100644 include/seqan/stream/zipstream/zipstream_impl.h
create mode 100644 include/seqan/stream/zipstream/zutil.h
create mode 100644 manual/source/HowTo/knime_node_app.zip
delete mode 100644 manual/source/Tutorial/AFirstExample.rst
create mode 100644 manual/source/Tutorial/AnnotationStore.rst
delete mode 100644 manual/source/Tutorial/FileIOOverview.rst
create mode 100644 manual/source/Tutorial/FirstStepsInSeqAn.rst
delete mode 100644 manual/source/Tutorial/GenomeAnnotations.rst
delete mode 100644 manual/source/Tutorial/GffAndGtfIO.rst
create mode 100644 manual/source/Tutorial/GffGtfIO.rst
create mode 100644 manual/source/Tutorial/IndexQGram.rst
create mode 100644 manual/source/Tutorial/InputOutputOverview.rst
create mode 100644 manual/source/Tutorial/JournalSet.rst
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create mode 100644 manual/source/Tutorial/MiniBowtie.rst
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delete mode 100644 manual/source/Tutorial/SamAndBamIO.rst
create mode 100644 manual/source/Tutorial/SamBamIO.rst
create mode 100644 manual/source/Tutorial/SimpleReadMapping.rst
rename manual/source/Tutorial/{GenericProgramming.rst => TemplateSubclassing.rst} (100%)
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delete mode 100644 tests/sequence/test_stringset_v2.cpp
delete mode 100644 util/cmake/CMakeFindJavaCommon.cmake
delete mode 100644 util/cmake/FindJava.cmake
create mode 100755 util/py_lib/seqan/dox/tpl/lib/bootstrap-multiselect/js/bootstrap-3.0.0.min.js
create mode 100644 util/py_lib/seqan/dox/tpl/lib/bootstrap-multiselect/js/jquery-2.0.3.min.js
create mode 100644 util/py_lib/seqan/dox/tpl/lib/bootstrap-multiselect/js/prettify.js
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