[med-svn] [seqan] 02/02: Skip extras and core/apps since

[Andreas Tille]

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tille pushed a commit to branch master
in repository seqan.

commit 3f44f3cf418592179f16568493265b82b88dd60a
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jul 26 11:00:17 2016 +0200

    Skip extras and core/apps since
---
 debian/patches/series                     |  2 +-
 debian/patches/skip_extras_and_apps.patch | 28 ++++++++++++++++++++
 debian/patches/skip_splazers_test.patch   | 44 -------------------------------
 3 files changed, 29 insertions(+), 45 deletions(-)

diff --git a/debian/patches/series b/debian/patches/series
index ece190b..fee3f56 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1 @@
-skip_splazers_test.patch
+skip_extras_and_apps.patch
diff --git a/debian/patches/skip_extras_and_apps.patch b/debian/patches/skip_extras_and_apps.patch
new file mode 100644
index 0000000..863024d
--- /dev/null
+++ b/debian/patches/skip_extras_and_apps.patch
@@ -0,0 +1,28 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 26 Jul 2016 09:44:38 +0200
+Description: Skip extras and core/apps since the seqan-apps package
+ is droped from 1.x series
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -121,8 +121,6 @@ seqan_get_repository_info ()
+ 
+ message (STATUS "Configuring core")
+ add_subdirectory (core)
+-message (STATUS "Configuring extras")
+-add_subdirectory (extras)
+ message (STATUS "Configuring docs")
+ add_subdirectory (docs)
+ message (STATUS "Configuring manual")
+--- a/core/CMakeLists.txt
++++ b/core/CMakeLists.txt
+@@ -17,9 +17,6 @@ set (CMAKE_INCLUDE_PATH ${CMAKE_INCLUDE_
+ # Setup the library modules from core.
+ seqan_setup_library (core core)
+ 
+-# Add subdirectory for apps.
+-add_subdirectory (apps)
+-
+ # Demos are required when doing a Whole SeqAn Release (copy demos) or when
+ # developing (build demos).
+ if (("${SEQAN_BUILD_SYSTEM}" STREQUAL "SEQAN_RELEASE") OR
diff --git a/debian/patches/skip_splazers_test.patch b/debian/patches/skip_splazers_test.patch
deleted file mode 100644
index 3d67388..0000000
--- a/debian/patches/skip_splazers_test.patch
+++ /dev/null
@@ -1,44 +0,0 @@
-Author: Andreas Tille <tille at debian.org>
-Last-Changed: Tue, 28 Jan 2014 09:09:09 +0100
-Bugs-Debian: http://bugs.debian.org/733250
-Description: deacticate test for apps splazers which fails since some point
- in time after uploading 1.4.1-2
- .
- Hint was given by upstream "Holtgrewe, Manuel" <manuel.holtgrewe at fu-berlin.de>
-
---- seqan-1.4.1.orig/core/apps/splazers/CMakeLists.txt
-+++ seqan-1.4.1/core/apps/splazers/CMakeLists.txt
-@@ -71,7 +71,8 @@
- # App Test
- # ----------------------------------------------------------------------------
- 
--seqan_add_app_test (splazers)
-+#  Deactivate test to fix #733248
-+#seqan_add_app_test (splazers)
- 
- # ----------------------------------------------------------------------------
- # CPack Install
---- seqan-1.4.1.orig/core/apps/razers/CMakeLists.txt
-+++ seqan-1.4.1/core/apps/razers/CMakeLists.txt
-@@ -74,7 +74,8 @@
- # App Test
- # ----------------------------------------------------------------------------
- 
--seqan_add_app_test (razers)
-+# Also this test fails on Debian Builds
-+# seqan_add_app_test (razers)
- 
- # ----------------------------------------------------------------------------
- # Setup Common Tool Description for Generic Workflow Nodes
---- seqan-1.4.1.orig/core/apps/razers2/CMakeLists.txt
-+++ seqan-1.4.1/core/apps/razers2/CMakeLists.txt
-@@ -75,7 +75,8 @@
- # App Test
- # ----------------------------------------------------------------------------
- 
--seqan_add_app_test (razers2)
-+# This test fails as well in Debian builds
-+# seqan_add_app_test (razers2)
- 
- # ----------------------------------------------------------------------------
- # Setup Common Tool Description for Generic Workflow Nodes

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