[med-svn] [genometools] 01/03: Merge tag 'debian/1.5.9+ds-2' into debian/jessie-backports
Sascha Steinbiss
satta at debian.org
Fri Jul 29 23:56:41 UTC 2016
This is an automated email from the git hooks/post-receive script.
satta pushed a commit to branch debian/jessie-backports
in repository genometools.
commit 46ed24f872b9f513f282c357c2201bf2aac6c2d9
Merge: c285929 0eb6393
Author: Sascha Steinbiss <satta at debian.org>
Date: Fri Jul 29 11:13:53 2016 +0000
Merge tag 'debian/1.5.9+ds-2' into debian/jessie-backports
genometools Debian release 1.5.9+ds-2
.github/ISSUE_TEMPLATE.md | 19 +
.github/PULL_REQUEST_TEMPLATE.md | 12 +
.gitignore | 1 +
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INSTALL | 25 +-
LICENSE | 33 +-
Makefile | 425 +-
VERSION | 2 +-
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www/genometools.org/htdocs/tools/gt_merge.html | 2 +-
www/genometools.org/htdocs/tools/gt_mergefeat.html | 2 +-
.../htdocs/tools/gt_mkfeatureindex.html | 2 +-
.../htdocs/tools/gt_mmapandread.html | 2 +-
www/genometools.org/htdocs/tools/gt_orffinder.html | 2 +-
.../htdocs/tools/gt_packedindex.html | 2 +-
www/genometools.org/htdocs/tools/gt_prebwt.html | 2 +-
.../htdocs/tools/gt_readjoiner.html | 2 +-
.../htdocs/tools/gt_readjoiner_assembly.html | 2 +-
.../htdocs/tools/gt_readjoiner_overlap.html | 2 +-
.../htdocs/tools/gt_readjoiner_prefilter.html | 2 +-
www/genometools.org/htdocs/tools/gt_repfind.html | 2 +-
.../htdocs/tools/gt_scriptfilter.html | 2 +-
.../tools/{gt_repfind.html => gt_seed_extend.html} | 86 +-
www/genometools.org/htdocs/tools/gt_select.html | 2 +-
www/genometools.org/htdocs/tools/gt_seq.html | 28 +-
www/genometools.org/htdocs/tools/gt_seqfilter.html | 2 +-
www/genometools.org/htdocs/tools/gt_seqids.html | 2 +-
www/genometools.org/htdocs/tools/gt_seqmutate.html | 2 +-
www/genometools.org/htdocs/tools/gt_seqorder.html | 20 +-
www/genometools.org/htdocs/tools/gt_seqstat.html | 2 +-
.../htdocs/tools/gt_seqtransform.html | 2 +-
.../htdocs/tools/gt_seqtranslate.html | 2 +-
www/genometools.org/htdocs/tools/gt_sequniq.html | 2 +-
www/genometools.org/htdocs/tools/gt_shredder.html | 2 +-
.../htdocs/tools/gt_shulengthdist.html | 2 +-
www/genometools.org/htdocs/tools/gt_simreads.html | 2 +-
www/genometools.org/htdocs/tools/gt_sketch.html | 2 +-
.../htdocs/tools/gt_sketch_page.html | 2 +-
www/genometools.org/htdocs/tools/gt_snpper.html | 2 +-
www/genometools.org/htdocs/tools/gt_speck.html | 4 +-
.../htdocs/tools/gt_splicesiteinfo.html | 2 +-
.../htdocs/tools/gt_splitfasta.html | 2 +-
www/genometools.org/htdocs/tools/gt_stat.html | 2 +-
www/genometools.org/htdocs/tools/gt_tagerator.html | 2 +-
www/genometools.org/htdocs/tools/gt_tallymer.html | 2 +-
.../htdocs/tools/gt_tallymer_mkindex.html | 2 +-
.../htdocs/tools/gt_tallymer_occratio.html | 2 +-
.../htdocs/tools/gt_tallymer_search.html | 2 +-
www/genometools.org/htdocs/tools/gt_tirvish.html | 2 +-
www/genometools.org/htdocs/tools/gt_uniq.html | 2 +-
www/genometools.org/htdocs/tools/gt_uniquesub.html | 2 +-
www/genometools.org/htdocs/tools/gt_wtree.html | 2 +-
788 files changed, 7256 insertions(+), 293718 deletions(-)
diff --cc debian/changelog
index b86025e,31334f3..5309043
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,9 -1,55 +1,61 @@@
+ genometools (1.5.9+ds-2) unstable; urgency=medium
+
+ * Use fixed date in split manual source.
+
+ -- Sascha Steinbiss <satta at debian.org> Sat, 23 Jul 2016 10:54:26 +0000
+
+ genometools (1.5.9+ds-1) unstable; urgency=medium
+
+ * New upstream release.
+ * Update patches.
+
+ -- Sascha Steinbiss <satta at debian.org> Fri, 22 Jul 2016 11:36:37 +0000
+
+ genometools (1.5.8+ds-4) unstable; urgency=medium
+
+ * Make documentation builds reproducible.
+ - Add extra date fields to developer's guide and
+ matstat manual.
+ * Update uploader email address.
+ * Bump Standards-Version.
+
+ -- Sascha Steinbiss <satta at debian.org> Sat, 02 Jul 2016 12:24:14 +0000
+
+ genometools (1.5.8+ds-3) unstable; urgency=medium
+
+ * Remove explicit -m32 and -m64.
+ * Fix dates in manuals (cf upstream PR #780) for reproducibility.
+ * Remove unnecessary maintainer scripts.
+ * Update upstream metadata.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 27 Apr 2016 09:25:08 +0000
+
+ genometools (1.5.8+ds-2) unstable; urgency=medium
+
+ * Fix locale (LC_PAPER) for LaTeX runs (reproducibility).
+ * Patch documentation generation to gather API symbols in
+ deterministic order.
+ * Do not delete two docu files in clean step.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 11 Mar 2016 16:10:42 +0000
+
+ genometools (1.5.8+ds-1) unstable; urgency=medium
+
+ * Make sure external headers are used for compilation.
+ Thanks to Justus Winter for the patch.
+ * Add some more spelling fixes.
+ * Exclude included third-party library code.
+ * Use xz compression for repacked tarballs.
+ * Use upstream distributions from GitHub.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Wed, 02 Mar 2016 15:43:46 +0000
+
+genometools (1.5.8-2~bpo8+1) jessie-backports; urgency=medium
+
+ * Rebuild for jessie-backports.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Fri, 19 Feb 2016 23:09:59 +0000
+
genometools (1.5.8-2) unstable; urgency=medium
* Document migration to Git in d/control
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/genometools.git
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