[med-svn] [sprai] 04/07: Refresh and update patch

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a commit to branch master
in repository sprai.

commit 5727ba5166a8c0fe26102bf3416023c0b9ade490
Author: Afif Elghraoui <afif at debian.org>
Date:   Wed Jun 1 22:58:30 2016 -0700

    Refresh and update patch
---
 debian/patches/libexec.patch | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

diff --git a/debian/patches/libexec.patch b/debian/patches/libexec.patch
index 8d35233..b1fd602 100644
--- a/debian/patches/libexec.patch
+++ b/debian/patches/libexec.patch
@@ -1,7 +1,7 @@
 Description: Set sprai libexec path and blast path for system-wide installation
 Author: Afif Elghraoui <afif at debian.org>
 Forwarded: not-needed
-Last-Update: 2016-04-26
+Last-Update: 2016-06-01
 --- sprai.orig/ezez4qsub_vx1.pl
 +++ sprai/ezez4qsub_vx1.pl
 @@ -117,8 +117,8 @@
@@ -46,8 +46,21 @@ Last-Update: 2016-04-26
 -# blast_path: where blastn and makeblastdb exist in
 -blast_path /home/imai/bin/
 -# sprai_path: where binaries of sprai (bfmt72s, nss2v_v3 and so on) exist in
--sprai_path /home/imai/sprai/bin/
+-sprai_path /home/imai/test/sprai/bin/
 -
  #### many node mode (advanced) ####
  
- #sge: options for all the SGE jobs
+ #sge: options for all the SGE jobs (used by ezez4qsub_vx1.pl)
+--- sprai.orig/ezez4makefile_v4.pl
++++ sprai/ezez4makefile_v4.pl
+@@ -84,8 +84,8 @@
+ my $estimated_depth = 0;
+ my @gsizes=();
+ my $ca_path="/opt/wgs-8.1/Linux-amd64/bin/";
+-my $blast_path="/usr/local/bin/";
+-my $sprai_path="/usr/local/bin/";
++my $blast_path="/usr/bin/";
++my $sprai_path="/usr/lib/sprai/";
+ my $param_makedb_rreq = ""; # not so much resource 
+ my $param_blast_rreq = ""; # desired to have a high CPU slot for latency optimization
+ my $param_ec_rreq = ""; # not so much resource 

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sprai.git