[med-svn] [subread] branch master updated (442cd80 -> 8320987)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository subread.

      from  442cd80   Update changelog, upload to unstable
       new  85c493a   Drop get-orig-source target, update d/watch to repack and use compression xz
       new  5c4e244   Imported Upstream version 1.5.0-p3+dfsg
       new  8320987   Merge tag 'upstream/1.5.0-p3+dfsg'

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/rules              |   3 -
 debian/watch              |   2 +-
 doc/SubreadUsersGuide.tex |   6 +-
 src/HelperFunctions.c     |  91 +++++++++++++
 src/HelperFunctions.h     |   2 +
 src/Makefile              |   1 -
 src/SNPCalling.c          |  63 ++++++---
 src/core-indel.c          |   5 +-
 src/core.c                |  57 ++++----
 src/input-files.c         | 338 ++++++++++++++++++++++++++++++++++++++++------
 src/input-files.h         |   4 +
 src/makefile.version      |   2 +-
 src/propmapped.c          |   1 +
 src/readSummary.c         |   7 +-
 src/test-fisher.c         |  84 ++++++++++++
 15 files changed, 568 insertions(+), 98 deletions(-)
 create mode 100644 src/test-fisher.c

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/subread.git