[med-svn] [spades] 07/09: add man pages

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository spades.

commit d0644c3d1286b7de8ca8a10cd366ed546746b41b
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Mon Jun 6 22:34:56 2016 +0000

    add man pages
---
 debian/changelog                    |  1 +
 debian/links                        |  2 ++
 debian/man_src/metaspades.1.adoc    | 18 ++++++++++++++++++
 debian/man_src/plasmidspades.1.adoc | 18 ++++++++++++++++++
 debian/man_src/spades.1.adoc        |  6 ++++++
 5 files changed, 45 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 2074546..f28eb87 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,7 @@ spades (3.8.0+dfsg-1) unstable; urgency=medium
   * Drop patches that are no longer necessary.
   * Update licenses.
   * Add metaspades and plasmidspades symlinks.
+  * Add man page stubs for metaspades and plasmidspades.
 
  -- Sascha Steinbiss <sascha at steinbiss.name>  Sun, 05 Jun 2016 09:56:42 +0000
 
diff --git a/debian/links b/debian/links
index 2766c27..78ab128 100644
--- a/debian/links
+++ b/debian/links
@@ -12,3 +12,5 @@ usr/bin/bwa     usr/lib/spades/bin/bwa-spades
 usr/share/man/man1/spades.1.gz /usr/share/man/man1/spades.py.1.gz
 usr/share/man/man1/dipspades.1.gz /usr/share/man/man1/dipspades.py.1.gz
 usr/share/man/man1/truspades.1.gz /usr/share/man/man1/truspades.py.1.gz
+usr/share/man/man1/metaspades.1.gz /usr/share/man/man1/metaspades.py.1.gz
+usr/share/man/man1/plasmidspades.1.gz /usr/share/man/man1/plasmidspades.py.1.gz
diff --git a/debian/man_src/metaspades.1.adoc b/debian/man_src/metaspades.1.adoc
new file mode 100644
index 0000000..978645c
--- /dev/null
+++ b/debian/man_src/metaspades.1.adoc
@@ -0,0 +1,18 @@
+= metaspades(1)
+
+## NAME
+
+metaspades - SPAdes genome assembler (metaSPAdes mode)
+
+## SYNOPSIS
+
+*metaspades* [options] -o <output_dir>
+
+## DESCRIPTION
+
+*metaspades* runs **SPAdes** in metaSPAdes mode. All parameters are identical to
+the regular SPAdes.
+
+## SEE ALSO
+
+spades(1)
diff --git a/debian/man_src/plasmidspades.1.adoc b/debian/man_src/plasmidspades.1.adoc
new file mode 100644
index 0000000..df6cdc2
--- /dev/null
+++ b/debian/man_src/plasmidspades.1.adoc
@@ -0,0 +1,18 @@
+= plasmidspades(1)
+
+## NAME
+
+plasmidspades - SPAdes genome assembler (plasmidSPAdes mode)
+
+## SYNOPSIS
+
+*plasmidspades* [options] -o <output_dir>
+
+## DESCRIPTION
+
+*plasmidspades* runs **SPAdes** in plasmidSPAdes mode. All parameters are identical to
+the regular SPAdes.
+
+## SEE ALSO
+
+spades(1)
diff --git a/debian/man_src/spades.1.adoc b/debian/man_src/spades.1.adoc
index 315a8a6..e2f6506 100644
--- a/debian/man_src/spades.1.adoc
+++ b/debian/man_src/spades.1.adoc
@@ -24,6 +24,12 @@ assembles genomic reads given to it and places the resulting assembly in
 *--sc*::
    this flag is required for MDA (single-cell) data
 
+*--meta*::
+   this flag is required for metagenomic sample data
+
+*--plasmid*::
+   Runs plasmidSPAdes pipeline for plasmid detection
+
 *--iontorrent*::
    this flag is required for IonTorrent data
 

-- 
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