[med-svn] [sspace] 03/08: add shebangs where necessary
Sascha Steinbiss
sascha at steinbiss.name
Tue Jun 7 21:36:44 UTC 2016
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sascha-guest pushed a commit to branch master
in repository sspace.
commit eddff7b06c651b9d3f2e43c6b74b28d4d1a08d96
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date: Tue Jun 7 21:32:37 2016 +0000
add shebangs where necessary
---
debian/patches/series | 1 +
debian/patches/shebangs.patch | 57 +++++++++++++++++++++++++++++++++++++++++++
2 files changed, 58 insertions(+)
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..cde028c
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+shebangs.patch
diff --git a/debian/patches/shebangs.patch b/debian/patches/shebangs.patch
new file mode 100644
index 0000000..ba8acaa
--- /dev/null
+++ b/debian/patches/shebangs.patch
@@ -0,0 +1,57 @@
+--- a/bin/ExtendOrFormatContigs.pl
++++ b/bin/ExtendOrFormatContigs.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ ###############################################################
+ #Marten Boetzer 1-03-2010 #
+ #SSPACE perl subscript ExtendOrFormatContigs.pl #
+--- a/bin/PairingAndScaffolding.pl
++++ b/bin/PairingAndScaffolding.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ ###################################################
+ #Marten Boetzer 14-07-2011 #
+ #SSPACE perl subscript PairingAndScaffolding.pl #
+--- a/bin/readLibFiles.pl
++++ b/bin/readLibFiles.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ #############################################################
+ #Marten Boetzer 13-06-2011 #
+ #SSPACE perl subscript readLibFiles.pl #
+@@ -228,4 +229,4 @@
+ $|++;
+ }
+
+-#########END readLibFiles.pl
+\ No newline at end of file
++#########END readLibFiles.pl
+--- a/tools/estimate_insert_size.pl
++++ b/tools/estimate_insert_size.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ ###################################################################################################################
+ #Marten Boetzer BaseClear B.v. 14-07-2011 #
+ #SSPACE perl subscript samToTab_multi.pl #
+--- a/tools/sam_bam2tab.pl
++++ b/tools/sam_bam2tab.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ ########################################################################
+ #Marten Boetzer BaseClear B.v. 26-07-2011 #
+ #SSPACE perl sam_bam2Tab.pl #
+@@ -96,4 +97,4 @@
+ my $countingMessager = shift;
+ print "\r$countingMessager";
+ $|++;
+-}
+\ No newline at end of file
++}
+--- a/tools/fq_all2std.pl
++++ b/tools/fq_all2std.pl
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl -w
++#!/usr/bin/env perl -w
+
+ # Author: lh3
+
--
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