[med-svn] [python-biopython] 01/10: Take over patch from upstream to fix detection of rpsblast

[Andreas Tille]

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tille pushed a commit to branch master
in repository python-biopython.

commit 150739ee14051b722ade634e5b23e6a965142b54
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jun 9 08:23:40 2016 +0200

    Take over patch from upstream to fix detection of rpsblast
---
 debian/changelog                               |  1 +
 debian/patches/fix_detection_of_rpsblast.patch | 17 +++++++++++++++++
 debian/patches/series                          |  1 +
 3 files changed, 19 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 98c8f7b..61dfae8 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,7 @@ python-biopython (1.67+dfsg-1) UNRELEASED; urgency=medium
   * New upstream version
   * Point d/watch to github
   * xz compression in d/watch
+  * Take over patch from upstream to fix detection of rpsblast 
 
  -- Andreas Tille <tille at debian.org>  Wed, 08 Jun 2016 21:21:55 +0200
 
diff --git a/debian/patches/fix_detection_of_rpsblast.patch b/debian/patches/fix_detection_of_rpsblast.patch
new file mode 100644
index 0000000..aca596d
--- /dev/null
+++ b/debian/patches/fix_detection_of_rpsblast.patch
@@ -0,0 +1,17 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 08 Jun 2016 21:21:55 +0200
+Origin: https://github.com/biopython/biopython/commit/ccaad103e393a356fb22b98b05772a4c4311fb48
+Description: Fix detection of rpsblast
+
+--- a/Tests/test_NCBI_BLAST_tools.py
++++ b/Tests/test_NCBI_BLAST_tools.py
+@@ -68,7 +68,8 @@ for folder in likely_dirs:
+         del exe_name, name
+ 
+ # To avoid the name clash with legacy BLAST, Debian introduced rpsblast+ alias
+-wanted.remove("rpsblast+")
++if "rpsblast+" in wanted:
++    wanted.remove("rpsblast+")
+ if "rpsblast+" in exe_names:
+     exe_names["rpsblast"] = exe_names["rpsblast+"]
+     del exe_names["rpsblast+"]
diff --git a/debian/patches/series b/debian/patches/series
index 60dbfde..cc9705d 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,3 +1,4 @@
 remove_mathml-qname.patch
 privacy_breach.patch
 fix_test_phyml_tool.patch
+fix_detection_of_rpsblast.patch

-- 
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