[med-svn] [tm-align] 04/05: add README for testsuite

[Tatiana Malygina]

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latticetower-guest pushed a commit to branch master
in repository tm-align.

commit ee740aee58205aa76e126aab0d0551ac4aa62d3f
Author: latticetower-guest <merlettaia at gmail.com>
Date:   Fri Jun 10 23:17:25 2016 +0000

    add README for testsuite
---
 debian/README.test | 37 +++++++++++++++++++++++++++++++++++++
 debian/changelog   |  1 +
 debian/docs        |  2 ++
 3 files changed, 40 insertions(+)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..2cc8bb0
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,37 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by executing
+
+    sh installation-test
+
+in order to confirm its integrity.
+
+Package contains 2 executable files - TMalign and TMscore.
+Both are called in `installation-test` script.
+
+To test manually, cd to some dir, where you have write permissions and do
+ 
+    cp -a /usr/share/doc/profbval/examples/* .
+    gunzip 1ni7.pdb.gz 5eep.pdb.gz
+
+Then run 
+    TMalign 1ni7.pdb 5eep.pdb 
+or
+    TMscore 1ni7.pdb 5eep.pdb 
+
+PDB structure files for this testsuite were picked randomly from RCSB PDB 
+database [1], based on sequence similarity (first I picked random protein 
+with 1 chain, then found similar structure with "Sequence Similarity Cutoff" 
+at level 95%). As a result, they have TM-score metric > 0.8.
+    
+By default, TM-align page [2] suggests for comparison pair of protein 
+structures with PDB ID "101m" and "1mba" - you can also run TMalign 
+with these two structures and compare your results with those stated 
+at Zhang Lab's site. 
+
+References:
+[1]: RCSB PDB database
+     http://www.rcsb.org
+[2]: TM-align page at Zhang Lab's site
+     http://zhanglab.ccmb.med.umich.edu/TM-align/
diff --git a/debian/changelog b/debian/changelog
index e6770f2..585b3d3 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,7 @@ tm-align (20160521+dfsg-2) UNRELEASED; urgency=medium
   * fix typo in package's description in d/control
   * add example gzipped protein structures+mention them in d/source/binaries 
   * add testsuite
+  * add README.test for testsuite
 
  -- Tatiana Malygina <merlettaia at gmail.com>  Fri, 10 Jun 2016 22:12:31 +0000
 
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..7cf93c4
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,2 @@
+debian/tests/installation-test
+debian/README.test

-- 
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