[med-svn] [gmap] 10/16: Merge tag 'upstream/2016-06-03'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository gmap.

commit d2ebf948313fdaee1eb554c752c9d57a0bfbf04c
Merge: 011f0e2 dc88157
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed Jun 8 16:36:09 2016 +0200

    Merge tag 'upstream/2016-06-03'
    
    Upstream version 2016-06-03

 ChangeLog           |  21 ++++++
 VERSION             |   2 +-
 configure           |  24 +++----
 src/gmap_select.c   |  22 +++----
 src/gmapl_select.c  |  22 +++----
 src/gsnap_select.c  |  22 +++----
 src/gsnapl_select.c |  22 +++----
 src/indexdb.c       |  17 ++++-
 src/sam_sort.c      |   5 +-
 src/sarray-read.c   |  10 +--
 src/stage1hr.c      | 182 ++++++++++++++++++++++++++++++++++------------------
 src/stage3hr.c      |  53 +++++++--------
 src/stage3hr.h      |   8 ++-
 13 files changed, 252 insertions(+), 158 deletions(-)

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