[med-svn] [r-bioc-limma] 03/06: Merge tag 'upstream/3.28.10+dfsg'

[Andreas Tille]

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tille pushed a commit to tag debian/3.28.10+dfsg-1
in repository r-bioc-limma.

commit 05a29d2094ca3fd2a9f76219280b7d0c8488082e
Merge: 95d3d4a f1fbb8b
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jun 22 17:29:36 2016 +0200

    Merge tag 'upstream/3.28.10+dfsg'
    
    Upstream version 3.28.10+dfsg

 DESCRIPTION                 |   6 +--
 NAMESPACE                   |   2 +
 R/alias2Symbol.R            |  20 +++----
 R/detectionPValues.R        |  41 ++++++++++++++
 R/dups.R                    |   2 +-
 R/fitFDistRobustly.R        |   2 +-
 R/fitmixture.R              |  48 +++++++++++++++++
 R/geneset-camera.R          |   9 ++--
 R/geneset-fry.R             |  10 ++--
 R/goana.R                   |  16 +++---
 R/loessFit.R                |   2 +-
 R/norm.R                    |   7 ++-
 R/read.idat.R               | 127 ++++++++++++++++++++++++++++++--------------
 R/sepchannel.R              |   2 +-
 inst/doc/changelog.txt      |  41 +++++++++++++-
 inst/doc/intro.pdf          | Bin 46191 -> 46191 bytes
 man/03reading.Rd            |   1 +
 man/10GeneSetTests.Rd       |   2 +-
 man/camera.Rd               |  37 ++++++++-----
 man/detectionPValue.Rd      |  58 ++++++++++++++++++++
 man/dupcor.Rd               |  40 +++++++++++---
 man/fitmixture.Rd           |  66 +++++++++++++++++++++++
 man/logcosh.Rd              |  26 +++++++++
 man/propexpr.Rd             |  37 ++++++++-----
 man/read.idat.Rd            |  77 ++++++++++++++++++---------
 man/roast.Rd                |   6 +--
 man/romer.Rd                |   2 +-
 tests/limma-Tests.R         |   4 ++
 tests/limma-Tests.Rout.save |  24 +++++++--
 29 files changed, 572 insertions(+), 143 deletions(-)

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