[med-svn] [phipack] branch upstream updated (dceefc2 -> d9d52ff)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository phipack.

      from  dceefc2   Imported Upstream version 0.0.20060425
       new  d9d52ff   Imported Upstream version 0.0.20160623

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ATP6.phy                    |   0
 README                      |  18 +++++
 ppma_2_bmp                  | Bin 0 -> 58172 bytes
 src/COPYING.LESSER          | 165 ++++++++++++++++++++++++++++++++++++++++++++
 src/Makefile                |   0
 src/fasta.c                 |  20 +++++-
 src/fasta.h                 |  17 +++++
 src/global.c                |  16 +++++
 src/global.h                |  15 ++++
 src/graphCode.c             |  19 ++++-
 src/graphCode.h             |  16 +++++
 src/main.c                  |  19 ++++-
 src/maxChi.c                |  18 ++++-
 src/maxChi.h                |  16 +++++
 src/mem.c                   |  16 +++++
 src/mem.h                   |  16 ++++-
 src/misc.c                  |  16 +++++
 src/misc.h                  |  16 +++++
 src/options.h               |  16 +++++
 src/pairScore.c             |  19 ++++-
 src/pairScore.h             |  15 ++++
 src/phylip.c                |  17 ++++-
 src/phylip.h                |  16 +++++
 src/ppma_2_bmp/Makefile     |   0
 src/ppma_2_bmp/ppma_2_bmp   | Bin 0 -> 58172 bytes
 src/ppma_2_bmp/ppma_2_bmp.C |   1 +
 src/ppma_2_bmp/ppma_io.C    |   1 +
 src/profile.c               |  17 ++++-
 src/profile_options.h       |  16 +++++
 src/queue.c                 |  19 ++++-
 src/queue.h                 |  15 ++++
 src/seqManip.c              |  19 ++++-
 src/seqManip.h              |  15 ++++
 src/stats.c                 |  19 ++++-
 src/stats.h                 |  15 ++++
 35 files changed, 603 insertions(+), 20 deletions(-)
 mode change 100755 => 100644 ATP6.phy
 create mode 100644 ppma_2_bmp
 create mode 100644 src/COPYING.LESSER
 mode change 100755 => 100644 src/Makefile
 mode change 100755 => 100644 src/ppma_2_bmp/Makefile
 create mode 100644 src/ppma_2_bmp/ppma_2_bmp

-- 
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