[med-svn] [t-coffee] branch master created (now 735431c)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository t-coffee.

        at  735431c   Moved packaging from SVN to Git

This branch includes the following new commits:

       new  b90dbfd   [svn-inject] Installing original source of t-coffee
       new  5e12881   [svn-inject] Forking t-coffee source to Trunk
       new  f265bb9   [svn-inject] Applying Debian modifications to trunk
       new  10166c9   Some cleanups to adapt T-Coffee for the latest version.
       new  f9c303a   [t-coffee]  * update to 5.05
       new  353ad4a   [t-coffee] Finalisation for upload.
       new  4ede900   T-Coffee * examples.docs file added * fixed last lintian error
       new  e07e21c   Debian menu transition also affects doc-base
       new  0fec965   Removing obsolete XS- prefix
       new  505475e   dmcoffee works out of the box now
       new  28c1dab   +XS-DM-Upload-Allowed: Yes
       new  d7c053d   I am a bit uncertain at the moment what all my changes exactly were about, mostly typos or other bits that annoyed me in the original package description of packages that I translated to German.
       new  5ed4cb9   converting to machine-readable format
       new  4df11f0   Fixed a building bug, and did various small changes
       new  5cbc71e   add watch file
       new  94a264e   Fixing case mistake
       new  b1df2bd   * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed * Added ?rev=0&sc=0 to Vcs-Browser fields * Sanitized Vcs-* fields
       new  294969a   * New upstream release
       new  d5e21ed   * Added myself to Uploaders * Minor changes to debian/rules
       new  319933b   Update to the latest doc-base policy.
       new  3cc4878   New upstream version, switched to CDBS, updated doc-base sections, using dialign-tx instead of dialign-t for m-coffee.
       new  d67b09a   Updated my email address.
       new  bcddadd   (D)M-Coffee has to be tested before uploading this pacakge.
       new  8fe67c8   New upstream release
       new  f9693c0   Patches updated: - some stylistic changes to reduce number of difflines - fixing some fprintf()s
       new  0bfc4d2   Removed myself from Uploaders (will work "behind the scenes" ;)
       new  2c60414   Reverting changes: version 5.65 is the latest stable version.
       new  2dfdeb2   Updated patches (dropping when possible), and copyright.
       new  f37d667   Updated the patch. Will upload tomorrow.
       new  77a0bd7   New upstream release with new dependancies.
       new  a43d3ce   The upstream install system was completely refactored, and T-Coffee includes new functionalities that require internet access. We have to understand them before updating our package.
       new  29ebcef   Some polishing, added myself to Uploaders even if I do not plan to upload before Charles has finished his planed work.
       new  0c200d2   Seems the linker result is not moved to directory bin any more but remains in source tree.  Attention: I have NOT read any installation instructions and it might be my change is wrong.  I just triued to fix the packaging bug.  Please handle with care.
       new  c834e96   Added a new dependancy and corrected a syntax error in debian/control.
       new  dbf3025   Keep lintian silent and add Depends:  also to arch all packages
       new  f0a20fd   Uploaded
       new  9702060   New upstream version
       new  1a29a55   New upstream version
       new  97be792   Collected Upstream information in debian/upstream-metadata.yaml.
       new  68a958b   New upstream version, source format 3.0 quilt
       new  4b3affb   Upload to unstable
       new  03ceb49   New upstream version
       new  107e2f3   Updated to latest upstream, some tweaks for lintian, test built on lucid
       new  1b4d275   Local change left uncommitted ... trivia.
       new  7afeae8   Converted and validated debian/copyright to DEP 5 machine-readable format.
       new  83d853a   Using debhelper 8.
       new  a3947dc   Enable upstream tests at build time.
       new  130923b   Uploaded after incrementing Standards-Version and correcting VCS URLs.
       new  9f07e74   Non-free file found in the new release of T-COFFEE.
       new  457b663   Renamed debian/upstream-metadata.yaml to debian/upstream.
       new  99a52aa   New upstream release with no new copyright or license compared to version 8.99-1
       new  7aeb161   Build new Fortran tool.
       new  c5ece7f   Corrected debian/rules as upstream test suite was removed.
       new  83ff571   debian/upstream: Moved DOI and PMID to the Reference namespace.
       new  2af613a   Document upstream webservice URL.
       new  223ccc1   Install TMalign.
       new  bac4830   Complies with Policy 3.9.3.
       new  7e0bef2   Updated Debian copyright Format URL with 'cme fix dpkg-copyright'.
       new  d4db78c   Removed doc-base registrations as the files disappeared upstream.
       new  8b11236   t-coffee (9.02.r1228-1) unstable; urgency=low
       new  30b569e   Corrected the files that did not validate with YAML::XS.
       new  2b0f660   t-coffee (9.02.r1228-2) unstable; urgency=low
       new  31db88d   Single Reference field instead of Reference-*
       new  7f56819   Various changes to T-Coffee.  Main one is that the upstream tarball no longer has docs so the -docs package was empty - I removed it.
       new  fb91dbb   Normalised debian/control with config-model-edit.
       new  65932fc   New upstream release (no new copyright nor license statements).
       new  638bcf3   Normalised VCS URLs.
       new  619f885   Using Debhelper 9.
       new  0357a23   Complies with Policy 3.9.4.
       new  ac53b9b   Consolidated changelog.
       new  e15298e   Added trivial header to probconsrna patch.
       new  71490d3   Removed README.test as no regression tests are ran anymore.
       new  c476d88   t-coffee (9.03.r1318-1) unstable; urgency=low
       new  5e18c40   New upstream release, no new license statment nor copyright notice.
       new  4e78837   Conforms to Policy 3.9.5.
       new  046aa1b   Suggest ncbi-blast+.
       new  ae713c4   Refresh patch
       new  364c5f2   Cope with renamings of *.pl scripts in ncbi-blast++
       new  7a37157   Removed myself from Uploaders.
       new  54f5c52   Move debian/upstream to debian/upstream/metadata
       new  ae6784d   Prepare new upstream version
       new  fc13df2   Update patches
       new  163006e   Move some suggested packages to Recommends since these are recommended when calling t_coffee --help
       new  95427da   Upload to unstable since waiting for fsa might be not realistic
       new  40758ab   cme fix dpkg-control
       new  e2e20a9   update debian/copyright
       new  2615730   fix clean target
       new  876fb40   compress changelog with '-n' option
       new  d138b98   hardening
       new  0630b29   hardening
       new  37bba18   Do not build unused TMalign
       new  0fcd771   Fix Mayhem issue
       new  9b62ac7   Set proper dir permissions, clean up packaging, notice that Mayhem issue is not finally fixed :-(
       new  ff4a5fc   Unable to fix Mayhem bug in a sensible time frame - insert some code to make the problem less urgent and drop some debugging code inside debian/patches which is not activated.
       new  7fcb972   make reproducible, hardening, housekeeping
       new  48f1cc6   Imported Upstream version 11.00.8cbe486
       new  cc37d94   Merge tag 'upstream/11.00.8cbe486'
       new  00a9a2c   Re-add debian/ dir
       new  735431c   Moved packaging from SVN to Git

The 99 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/t-coffee.git