[med-svn] [iqtree] branch master updated (5abbd97 -> 27da97f)
Andreas Tille
tille at debian.org
Fri Jun 24 20:13:03 UTC 2016
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tille pushed a change to branch master
in repository iqtree.
from 5abbd97 Update sse3 removel patch
adds 35c46f5 Imported Upstream version 1.4.0+dfsg
new a68a042 Imported Upstream version 1.4.2+dfsg
new 8f72194 Merge tag 'upstream/1.4.2+dfsg'
new 27da97f New upstream version
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 2 +-
alignment.cpp | 4 +-
alignment.h | 4 +-
debian/changelog | 2 +-
iqtree.cpp | 114 +++++----
model/modelfactory.cpp | 124 +++++++++-
model/modelfactory.h | 8 +
model/modelgtr.cpp | 1 +
model/partitionmodel.cpp | 33 +++
model/partitionmodel.h | 8 +
model/ratefree.cpp | 1 +
model/ratefree.h | 2 +-
model/ratefreeinvar.cpp | 2 +-
model/rategamma.cpp | 1 +
model/rategamma.h | 2 +-
model/rategammainvar.cpp | 36 ++-
model/rategammainvar.h | 9 +
model/rateheterogeneity.h | 16 ++
model/rateinvar.cpp | 6 +-
model/ratekategory.cpp | 1 +
msetsblock.cpp | 1 +
pda.cpp | 2 +-
phyloanalysis.cpp | 34 +--
phylosupertreeplen.cpp | 7 +
phylosupertreeplen.h | 9 +
phylotesting.cpp | 41 +++-
phylotree.cpp | 5 +-
phylotree.h | 34 +--
quartet.cpp | 611 +++++++++++++++++++++++++---------------------
superalignment.cpp | 20 +-
superalignment.h | 4 +-
tools.cpp | 52 +++-
tools.h | 23 +-
33 files changed, 812 insertions(+), 407 deletions(-)
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