[med-svn] [beagle] 05/06: Refresh patch

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository beagle.

commit 82d376410b97a561cccdee506f507ef5c35ae32c
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sat Jun 25 00:35:51 2016 +0200

    Refresh patch
---
 debian/patches/01_Update_htsjtk.patch | 27 ++++++++-------------------
 1 file changed, 8 insertions(+), 19 deletions(-)

diff --git a/debian/patches/01_Update_htsjtk.patch b/debian/patches/01_Update_htsjtk.patch
index 8c0b98d..b9e1bb4 100644
--- a/debian/patches/01_Update_htsjtk.patch
+++ b/debian/patches/01_Update_htsjtk.patch
@@ -6,22 +6,11 @@ Forwarded: No
 --- a/blbutil/InputIt.java
 +++ b/blbutil/InputIt.java
 @@ -28,7 +28,7 @@
- import java.io.InputStreamReader;
- import java.util.NoSuchElementException;
- import java.util.zip.GZIPInputStream;
--import net.sf.samtools.util.BlockCompressedInputStream;
-+import htsjdk.samtools.util.BlockCompressedInputStream;
- 
- /**
-  * <p>Class {@code InputIt} is a buffered iterator whose {@code next()}
---- a/blbutil/FileUtil.java
-+++ b/blbutil/FileUtil.java
-@@ -32,7 +32,7 @@
- import java.io.OutputStream;
- import java.io.PrintWriter;
- import java.util.zip.GZIPOutputStream;
--import net.sf.samtools.util.BlockCompressedOutputStream;
-+import htsjdk.samtools.util.BlockCompressedOutputStream;
- 
- /**
-  * Class {@code FileUtil} contains static methods for working with files.
+ import java.io.InputStreamReader;
+ import java.util.NoSuchElementException;
+ import java.util.zip.GZIPInputStream;
+-import net.sf.samtools.util.BlockCompressedInputStream;
++import htsjdk.samtools.util.BlockCompressedInputStream;
+ 
+ /**
+  * <p>Class {@code InputIt} is a buffered iterator whose {@code next()}

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