[med-svn] [r-bioc-geneplotter] 01/02: Try hard to get autopkgtest by rebuilding vignettes

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-bioc-geneplotter.

commit 094c243c08f92496e75acd8c3df5dfda00930b4b
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jun 29 09:09:41 2016 +0200

    Try hard to get autopkgtest by rebuilding vignettes
---
 debian/README.test         |  8 ++++++++
 debian/docs                |  2 ++
 debian/tests/control       |  3 +++
 debian/tests/run-unit-test | 19 +++++++++++++++++++
 4 files changed, 32 insertions(+)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..55a9142
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh  run-unit-test
+
+in this directory.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..9a4f4f8
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,2 @@
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..d2aa55a
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..54f1444
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,19 @@
+#!/bin/sh -e
+oname=biovizBase
+pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+fi
+cd $ADTTMP
+cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for rnw in `ls *.[rRS]nw` ; do
+rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`
+R --no-save <<EOT
+  Stangle("$rnw")
+  source("$rfile", echo=TRUE)
+EOT
+  echo "$rnw passed"
+done

-- 
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