[med-svn] [vsearch] branch master updated (05b78bd -> d6c774f)

[Andreas Tille]

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tille pushed a change to branch master
in repository vsearch.

      from  05b78bd   Upload to unstable
      adds  f83c1ff   Imported Upstream version 1.11.1
       new  ecb9cf5   Imported Upstream version 2.0.0
       new  516b274   Merge tag 'upstream/2.0.0'
       new  7f5249a   New upstream version
       new  d6c774f   Upload to unstable

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 configure.ac       |   2 +-
 debian/changelog   |   6 +
 man/vsearch.1      |  87 +++++++---
 src/chimera.cc     |   2 +-
 src/dynlibs.cc     |  17 +-
 src/dynlibs.h      |   4 +
 src/eestats.cc     |   2 +-
 src/fasta.cc       | 316 +++-------------------------------
 src/fasta.h        |  63 ++-----
 src/fastq.cc       | 368 ++++-----------------------------------
 src/fastq.h        |  71 ++------
 src/fastqops.cc    |   8 +-
 src/fastx.cc       | 491 ++++++++++++++++++++++++++++++++++++++---------------
 src/fastx.h        |  53 +++++-
 src/maps.cc        |  53 ++++++
 src/maps.h         |   1 +
 src/mergepairs.cc  |   4 +-
 src/msa.cc         |  82 +++------
 src/rerep.cc       |   2 +-
 src/search.cc      |   2 +-
 src/searchcore.cc  |   4 +-
 src/searchexact.cc |   2 +-
 src/util.cc        |   2 +-
 src/vsearch.cc     | 113 +++++++++++-
 src/vsearch.h      |   4 +-
 25 files changed, 789 insertions(+), 970 deletions(-)

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