[med-svn] [circlator] 02/02: Initial packaging

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a commit to branch master
in repository circlator.

commit 36a5a23840e94d64b9f372db1f8f53056560779b
Author: Afif Elghraoui <aelghraoui at sdsu.edu>
Date:   Mon Mar 7 17:07:37 2016 -0800

    Initial packaging
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 34 ++++++++++++++++++++++++++++++++++
 debian/copyright     | 29 +++++++++++++++++++++++++++++
 debian/docs          |  1 +
 debian/rules         |  7 +++++++
 debian/source/format |  1 +
 7 files changed, 78 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..b0b0c9e
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+circlator (1.1.4-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #nnnn)
+
+ -- Afif Elghraoui <aelghraoui at sdsu.edu>  Mon, 07 Mar 2016 14:20:54 -0800
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..e3cb9df
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,34 @@
+Source: circlator
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <aelghraoui at sdsu.edu>
+Build-Depends:
+	debhelper (>= 9),
+	dh-python,
+	python3-setuptools,
+	python3-openpyxl,
+	python3-jdcal,
+	fastaq (>= 3.10.0),
+	python3-pysam (>= 0.8.1),
+	python3-pymummer (>= 0.6.1),
+	python3-bio-assembly-refinement,
+Standards-Version: 3.9.7
+Homepage: http://sanger-pathogens.github.io/circlator/
+Vcs-Git: https://anonscm.debian.org/git/debian-med/circlator.git
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/circlator.git
+
+Package: circlator
+Architecture: all
+Depends:
+	${misc:Depends},
+	${python3:Depends},
+	prodigal,
+	bwa (>= 0.7.12),
+	mummer,
+	samtools,
+	spades,
+Description: circularize genome assemblies
+ Circlator is a tool to automate assembly circularization for bacterial and
+ small eukaryotic genomes and produce accurate linear representations of
+ circular sequences.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..dc27598
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,29 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: circlator
+Source: https://github.com/sanger-pathogens/circlator
+
+Files: *
+Copyright: <years> <put author's name and email here>
+           <years> <likewise for another author>
+License: GPL-3.0+
+
+Files: debian/*
+Copyright: 2016 Afif Elghraoui <aelghraoui at sdsu.edu>
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..b43bf86
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+README.md
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..4a7e6cd
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+
+#DH_VERBOSE = 1
+#include /usr/share/dpkg/default.mk
+
+%:
+	dh $@ --with python3 --buildsystem=pybuild
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/circlator.git