[med-svn] [genometools] 02/08: add spelling fixes

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository genometools.

commit f132b41c8dfe1136bd48a15b07dc438530ef539c
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Mon Mar 7 23:00:47 2016 +0000

    add spelling fixes
---
 debian/changelog        |  3 ++-
 debian/patches/spelling | 39 ++++++++++++++++++++++++++++++++++++---
 2 files changed, 38 insertions(+), 4 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 3262281..c5fe3cd 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,7 +1,8 @@
-genometools (1.5.8-3) UNRELEASED; urgency=medium
+genometools (1.5.8-3) unstable; urgency=medium
 
   * Make sure external headers are used for compilation.
     Thanks to Justus Winter for the patch.
+  * Some more spelling fixes.
 
  -- Sascha Steinbiss <sascha at steinbiss.name>  Wed, 02 Mar 2016 15:43:46 +0000
 
diff --git a/debian/patches/spelling b/debian/patches/spelling
index a9ebd39..c2b4807 100644
--- a/debian/patches/spelling
+++ b/debian/patches/spelling
@@ -1,7 +1,7 @@
-Description: fix spelling of occurred 
+Description: fix spelling issues
 Author: Sascha Steinbiss <sascha at steinbiss.name> 
-Forwarded: https://github.com/genometools/genometools/pull/727 
-Last-Update: 2016-01-07 
+Forwarded: https://github.com/genometools/genometools/pull/727, https://github.com/genometools/genometools/pull/762
+Last-Update: 2016-03-07
 --- a/gtdata/doc/fingerprint.lua
 +++ b/gtdata/doc/fingerprint.lua
 @@ -36,5 +36,5 @@
@@ -217,3 +217,36 @@ Last-Update: 2016-01-07
                                     "than this value won't be saved",
                                     &arguments->cutoff_value, (GtUword) 30,
                                     (GtUword) 1);
+--- a/gtdata/doc/extractseq.lua
++++ b/gtdata/doc/extractseq.lua
+@@ -46,7 +46,7 @@
+ 
+ If the end of the argument list only contains one filename, say fastaindex, then
+ it is checked if there is a file `fastaindex.kys`. This makes up part of the
+-fasta index, which is contructed by calling the suffixerator tool as follows:
++fasta index, which is constructed by calling the suffixerator tool as follows:
+ 
+   gt suffixerator -protein -ssp -tis -des -sds -kys -indexname fastaindex \
+     -db inputfile1 [inputfile2 ..]
+--- a/src/gth/parse_options.c
++++ b/src/gth/parse_options.c
+@@ -381,7 +381,7 @@
+   gt_option_parser_add_option(op, optverbose);
+ 
+   /* -verboseseqs */
+-  optverboseseqs = gt_option_new_bool("verboseseqs", "show additonal sequence "
++  optverboseseqs = gt_option_new_bool("verboseseqs", "show additional sequence "
+                                    "information\n(for debugging purposes)",
+                                    &call_info->out->verboseseqs, false);
+   gt_option_is_development_option(optverboseseqs);
+--- a/www/genometools.org/htdocs/tools/gt_extractseq.html
++++ b/www/genometools.org/htdocs/tools/gt_extractseq.html
+@@ -211,7 +211,7 @@
+ </ul></div>
+ <div class="paragraph"><p>If the end of the argument list only contains one filename, say fastaindex, then
+ it is checked if there is a file <tt>fastaindex.kys</tt>. This makes up part of the
+-fasta index, which is contructed by calling the suffixerator tool as follows:</p></div>
++fasta index, which is constructed by calling the suffixerator tool as follows:</p></div>
+ <div class="literalblock">
+ <div class="content">
+ <pre><tt>gt suffixerator -protein -ssp -tis -des -sds -kys -indexname fastaindex \

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