[med-svn] [genometools] 05/08: Merge tag 'upstream/1.5.8+ds'
Sascha Steinbiss
sascha at steinbiss.name
Tue Mar 8 01:11:31 UTC 2016
This is an automated email from the git hooks/post-receive script.
sascha-guest pushed a commit to branch master
in repository genometools.
commit 854ac1f4f62af8dd6800a474bf38915b93702310
Merge: 3f28322 a131c3a
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date: Tue Mar 8 00:44:18 2016 +0000
Merge tag 'upstream/1.5.8+ds'
Upstream version 1.5.8+ds
src/external/bzip2-1.0.6/CHANGES | 327 -
src/external/bzip2-1.0.6/LICENSE | 42 -
src/external/bzip2-1.0.6/Makefile | 217 -
src/external/bzip2-1.0.6/Makefile-libbz2_so | 59 -
src/external/bzip2-1.0.6/README | 215 -
.../bzip2-1.0.6/README.COMPILATION.PROBLEMS | 58 -
src/external/bzip2-1.0.6/README.XML.STUFF | 45 -
src/external/bzip2-1.0.6/blocksort.c | 1094 -
src/external/bzip2-1.0.6/bz-common.xsl | 39 -
src/external/bzip2-1.0.6/bz-fo.xsl | 276 -
src/external/bzip2-1.0.6/bz-html.xsl | 20 -
src/external/bzip2-1.0.6/bzdiff | 76 -
src/external/bzip2-1.0.6/bzdiff.1 | 47 -
src/external/bzip2-1.0.6/bzgrep | 75 -
src/external/bzip2-1.0.6/bzgrep.1 | 56 -
src/external/bzip2-1.0.6/bzip.css | 74 -
src/external/bzip2-1.0.6/bzip2.1 | 454 -
src/external/bzip2-1.0.6/bzip2.1.preformatted | 399 -
src/external/bzip2-1.0.6/bzip2.c | 2034 -
src/external/bzip2-1.0.6/bzip2.txt | 391 -
src/external/bzip2-1.0.6/bzip2recover.c | 514 -
src/external/bzip2-1.0.6/bzlib.c | 1572 -
src/external/bzip2-1.0.6/bzlib.h | 282 -
src/external/bzip2-1.0.6/bzlib_private.h | 509 -
src/external/bzip2-1.0.6/bzmore | 61 -
src/external/bzip2-1.0.6/bzmore.1 | 152 -
src/external/bzip2-1.0.6/compress.c | 672 -
src/external/bzip2-1.0.6/crctable.c | 104 -
src/external/bzip2-1.0.6/decompress.c | 646 -
src/external/bzip2-1.0.6/dlltest.c | 175 -
src/external/bzip2-1.0.6/dlltest.dsp | 93 -
src/external/bzip2-1.0.6/entities.xml | 9 -
src/external/bzip2-1.0.6/format.pl | 68 -
src/external/bzip2-1.0.6/huffman.c | 205 -
src/external/bzip2-1.0.6/libbz2.def | 27 -
src/external/bzip2-1.0.6/libbz2.dsp | 130 -
src/external/bzip2-1.0.6/makefile.msc | 63 -
src/external/bzip2-1.0.6/mk251.c | 31 -
src/external/bzip2-1.0.6/randtable.c | 84 -
src/external/bzip2-1.0.6/spewG.c | 54 -
src/external/bzip2-1.0.6/unzcrash.c | 141 -
src/external/bzip2-1.0.6/words0 | 9 -
src/external/bzip2-1.0.6/words1 | 4 -
src/external/bzip2-1.0.6/words2 | 5 -
src/external/bzip2-1.0.6/words3 | 30 -
src/external/bzip2-1.0.6/xmlproc.sh | 114 -
src/external/cgilua-5.1.3/Makefile | 21 -
src/external/cgilua-5.1.3/Makefile.win | 13 -
src/external/cgilua-5.1.3/README | 119 -
src/external/cgilua-5.1.3/doc/br/cgi-128.gif | Bin 4468 -> 0 bytes
src/external/cgilua-5.1.3/doc/br/index.html | 162 -
src/external/cgilua-5.1.3/doc/br/libraries.html | 143 -
src/external/cgilua-5.1.3/doc/br/license.html | 102 -
src/external/cgilua-5.1.3/doc/br/manual.html | 270 -
src/external/cgilua-5.1.3/doc/br/reference.html | 252 -
src/external/cgilua-5.1.3/doc/br/sapi.html | 152 -
src/external/cgilua-5.1.3/doc/us/cgi-128.gif | Bin 4468 -> 0 bytes
src/external/cgilua-5.1.3/doc/us/index.html | 324 -
src/external/cgilua-5.1.3/doc/us/libraries.html | 255 -
src/external/cgilua-5.1.3/doc/us/license.html | 143 -
src/external/cgilua-5.1.3/doc/us/manual.html | 800 -
src/external/cgilua-5.1.3/doc/us/reference.html | 445 -
src/external/cgilua-5.1.3/doc/us/sapi.html | 236 -
.../cgilua-5.1.3/examples/authentication_conf.lua | 128 -
src/external/cgilua-5.1.3/examples/check.lua | 28 -
src/external/cgilua-5.1.3/examples/login.lp | 20 -
.../cgilua-5.1.3/rockspec/cgilua-5.1.2-1.rockspec | 33 -
.../cgilua-5.1.3/rockspec/cgilua-5.1.2-2.rockspec | 33 -
.../rockspec/cgilua-5.1.2rc1-1.rockspec | 33 -
.../cgilua-5.1.3/rockspec/cgilua-5.1.3-1.rockspec | 49 -
.../cgilua-5.1.3/rockspec/cgilua-cvs-2.rockspec | 29 -
.../cgilua-5.1.3/rockspec/cgilua-cvs-3.rockspec | 35 -
.../cgilua-5.1.3/rockspec/cgilua-cvs-4.rockspec | 51 -
.../cgilua-5.1.3/src/cgilua/authentication.lua | 219 -
src/external/cgilua-5.1.3/src/cgilua/cgilua.lua | 641 -
src/external/cgilua-5.1.3/src/cgilua/cookies.lua | 100 -
.../cgilua-5.1.3/src/cgilua/dispatcher.lua | 70 -
src/external/cgilua-5.1.3/src/cgilua/loader.lua | 91 -
src/external/cgilua-5.1.3/src/cgilua/lp.lua | 133 -
src/external/cgilua-5.1.3/src/cgilua/mime.lua | 174 -
src/external/cgilua-5.1.3/src/cgilua/post.lua | 293 -
src/external/cgilua-5.1.3/src/cgilua/readuntil.lua | 44 -
src/external/cgilua-5.1.3/src/cgilua/serialize.lua | 113 -
src/external/cgilua-5.1.3/src/cgilua/session.lua | 247 -
src/external/cgilua-5.1.3/src/cgilua/urlcode.lua | 100 -
src/external/cgilua-5.1.3/tests/Makefile | 18 -
src/external/cgilua-5.1.3/tests/download.lua | 75 -
src/external/cgilua-5.1.3/tests/env.lua | 26 -
src/external/cgilua-5.1.3/tests/overview.lp | 64 -
src/external/cgilua-5.1.3/tests/prepara_sql2.lua | 33 -
src/external/cgilua-5.1.3/tests/tcgi1.lua | 11 -
src/external/cgilua-5.1.3/tests/test.html | 78 -
src/external/cgilua-5.1.3/tests/test_conc.lua | 38 -
src/external/cgilua-5.1.3/tests/test_cookies.lp | 13 -
src/external/cgilua-5.1.3/tests/test_cookies.lua | 14 -
src/external/cgilua-5.1.3/tests/test_err.lua | 4 -
src/external/cgilua-5.1.3/tests/test_fs.lua | 23 -
src/external/cgilua-5.1.3/tests/test_htk.lua | 22 -
src/external/cgilua-5.1.3/tests/test_lib.lua | 31 -
src/external/cgilua-5.1.3/tests/test_main.html | 170 -
src/external/cgilua-5.1.3/tests/test_main.lp | 32 -
src/external/cgilua-5.1.3/tests/test_main.lua | 48 -
src/external/cgilua-5.1.3/tests/test_session.lua | 43 -
src/external/cgilua-5.1.3/tests/test_sql.lua | 13 -
src/external/cgilua-5.1.3/tests/test_sql2.lua | 24 -
src/external/cgilua-5.1.3/tests/test_variables.lp | 14 -
src/external/cgilua-5.1.3/tests/tfcgi1.lua | 10 -
src/external/cgilua-5.1.3/tests/tmod1.lua | 24 -
src/external/expat-2.0.1/COPYING | 22 -
src/external/expat-2.0.1/Changes | 169 -
src/external/expat-2.0.1/MANIFEST | 128 -
src/external/expat-2.0.1/README | 137 -
src/external/expat-2.0.1/examples/elements.c | 65 -
src/external/expat-2.0.1/examples/elements.dsp | 103 -
src/external/expat-2.0.1/examples/outline.c | 106 -
src/external/expat-2.0.1/examples/outline.dsp | 103 -
src/external/expat-2.0.1/lib/Makefile.MPW | 206 -
src/external/expat-2.0.1/lib/amigaconfig.h | 32 -
src/external/expat-2.0.1/lib/ascii.h | 92 -
src/external/expat-2.0.1/lib/asciitab.h | 36 -
src/external/expat-2.0.1/lib/expat.dsp | 185 -
src/external/expat-2.0.1/lib/expat.h | 1014 -
src/external/expat-2.0.1/lib/expat_external.h | 115 -
src/external/expat-2.0.1/lib/expat_static.dsp | 162 -
src/external/expat-2.0.1/lib/expatw.dsp | 185 -
src/external/expat-2.0.1/lib/expatw_static.dsp | 162 -
src/external/expat-2.0.1/lib/iasciitab.h | 37 -
src/external/expat-2.0.1/lib/internal.h | 73 -
src/external/expat-2.0.1/lib/latin1tab.h | 36 -
src/external/expat-2.0.1/lib/libexpat.def | 73 -
src/external/expat-2.0.1/lib/libexpatw.def | 73 -
src/external/expat-2.0.1/lib/macconfig.h | 53 -
src/external/expat-2.0.1/lib/nametab.h | 150 -
src/external/expat-2.0.1/lib/utf8tab.h | 37 -
src/external/expat-2.0.1/lib/winconfig.h | 30 -
src/external/expat-2.0.1/lib/xmlparse.c | 6296 -
src/external/expat-2.0.1/lib/xmlrole.c | 1336 -
src/external/expat-2.0.1/lib/xmlrole.h | 114 -
src/external/expat-2.0.1/lib/xmltok.c | 1652 -
src/external/expat-2.0.1/lib/xmltok.h | 316 -
src/external/expat-2.0.1/lib/xmltok_impl.c | 1783 -
src/external/expat-2.0.1/lib/xmltok_impl.h | 46 -
src/external/expat-2.0.1/lib/xmltok_ns.c | 115 -
src/external/lpeg-0.10.2/HISTORY | 77 -
src/external/lpeg-0.10.2/lpeg-128.gif | Bin 4923 -> 0 bytes
src/external/lpeg-0.10.2/lpeg.c | 2405 -
src/external/lpeg-0.10.2/lpeg.h | 39 -
src/external/lpeg-0.10.2/lpeg.html | 1423 -
src/external/lpeg-0.10.2/makefile | 42 -
src/external/lpeg-0.10.2/re.html | 486 -
src/external/lpeg-0.10.2/re.lua | 248 -
src/external/lpeg-0.10.2/test.lua | 1188 -
src/external/lua-5.1.5/COPYRIGHT | 34 -
src/external/lua-5.1.5/HISTORY | 183 -
src/external/lua-5.1.5/INSTALL | 99 -
src/external/lua-5.1.5/Makefile | 128 -
src/external/lua-5.1.5/README | 37 -
src/external/lua-5.1.5/doc/contents.html | 497 -
src/external/lua-5.1.5/doc/cover.png | Bin 3305 -> 0 bytes
src/external/lua-5.1.5/doc/logo.gif | Bin 4232 -> 0 bytes
src/external/lua-5.1.5/doc/lua.1 | 163 -
src/external/lua-5.1.5/doc/lua.css | 83 -
src/external/lua-5.1.5/doc/lua.html | 172 -
src/external/lua-5.1.5/doc/luac.1 | 136 -
src/external/lua-5.1.5/doc/luac.html | 145 -
src/external/lua-5.1.5/doc/manual.css | 24 -
src/external/lua-5.1.5/doc/manual.html | 8804 -
src/external/lua-5.1.5/doc/readme.html | 40 -
src/external/lua-5.1.5/etc/Makefile | 44 -
src/external/lua-5.1.5/etc/README | 37 -
src/external/lua-5.1.5/etc/all.c | 38 -
src/external/lua-5.1.5/etc/lua.hpp | 9 -
src/external/lua-5.1.5/etc/lua.ico | Bin 1078 -> 0 bytes
src/external/lua-5.1.5/etc/lua.pc | 31 -
src/external/lua-5.1.5/etc/luavs.bat | 28 -
src/external/lua-5.1.5/etc/min.c | 39 -
src/external/lua-5.1.5/etc/noparser.c | 50 -
src/external/lua-5.1.5/etc/strict.lua | 41 -
src/external/lua-5.1.5/src/Makefile | 182 -
src/external/lua-5.1.5/src/lapi.c | 1087 -
src/external/lua-5.1.5/src/lapi.h | 16 -
src/external/lua-5.1.5/src/lauxlib.c | 653 -
src/external/lua-5.1.5/src/lauxlib.h | 174 -
src/external/lua-5.1.5/src/lbaselib.c | 653 -
src/external/lua-5.1.5/src/lcode.c | 831 -
src/external/lua-5.1.5/src/lcode.h | 76 -
src/external/lua-5.1.5/src/ldblib.c | 398 -
src/external/lua-5.1.5/src/ldebug.c | 638 -
src/external/lua-5.1.5/src/ldebug.h | 33 -
src/external/lua-5.1.5/src/ldo.c | 519 -
src/external/lua-5.1.5/src/ldo.h | 57 -
src/external/lua-5.1.5/src/ldump.c | 164 -
src/external/lua-5.1.5/src/lfunc.c | 174 -
src/external/lua-5.1.5/src/lfunc.h | 34 -
src/external/lua-5.1.5/src/lgc.c | 710 -
src/external/lua-5.1.5/src/lgc.h | 110 -
src/external/lua-5.1.5/src/linit.c | 38 -
src/external/lua-5.1.5/src/liolib.c | 556 -
src/external/lua-5.1.5/src/llex.c | 463 -
src/external/lua-5.1.5/src/llex.h | 81 -
src/external/lua-5.1.5/src/llimits.h | 128 -
src/external/lua-5.1.5/src/lmathlib.c | 263 -
src/external/lua-5.1.5/src/lmem.c | 86 -
src/external/lua-5.1.5/src/lmem.h | 49 -
src/external/lua-5.1.5/src/loadlib.c | 666 -
src/external/lua-5.1.5/src/lobject.c | 214 -
src/external/lua-5.1.5/src/lobject.h | 381 -
src/external/lua-5.1.5/src/lopcodes.c | 102 -
src/external/lua-5.1.5/src/lopcodes.h | 268 -
src/external/lua-5.1.5/src/loslib.c | 243 -
src/external/lua-5.1.5/src/lparser.c | 1339 -
src/external/lua-5.1.5/src/lparser.h | 82 -
src/external/lua-5.1.5/src/lstate.c | 214 -
src/external/lua-5.1.5/src/lstate.h | 169 -
src/external/lua-5.1.5/src/lstring.c | 111 -
src/external/lua-5.1.5/src/lstring.h | 31 -
src/external/lua-5.1.5/src/lstrlib.c | 871 -
src/external/lua-5.1.5/src/ltable.c | 588 -
src/external/lua-5.1.5/src/ltable.h | 40 -
src/external/lua-5.1.5/src/ltablib.c | 287 -
src/external/lua-5.1.5/src/ltm.c | 75 -
src/external/lua-5.1.5/src/ltm.h | 54 -
src/external/lua-5.1.5/src/lua.c | 392 -
src/external/lua-5.1.5/src/lua.h | 388 -
src/external/lua-5.1.5/src/luac.c | 200 -
src/external/lua-5.1.5/src/luaconf.h | 763 -
src/external/lua-5.1.5/src/lualib.h | 53 -
src/external/lua-5.1.5/src/lundump.c | 227 -
src/external/lua-5.1.5/src/lundump.h | 36 -
src/external/lua-5.1.5/src/lvm.c | 767 -
src/external/lua-5.1.5/src/lvm.h | 36 -
src/external/lua-5.1.5/src/lzio.c | 82 -
src/external/lua-5.1.5/src/lzio.h | 67 -
src/external/lua-5.1.5/src/print.c | 227 -
src/external/lua-5.1.5/test/README | 26 -
src/external/lua-5.1.5/test/bisect.lua | 27 -
src/external/lua-5.1.5/test/cf.lua | 16 -
src/external/lua-5.1.5/test/echo.lua | 5 -
src/external/lua-5.1.5/test/env.lua | 7 -
src/external/lua-5.1.5/test/factorial.lua | 32 -
src/external/lua-5.1.5/test/fib.lua | 40 -
src/external/lua-5.1.5/test/fibfor.lua | 13 -
src/external/lua-5.1.5/test/globals.lua | 13 -
src/external/lua-5.1.5/test/hello.lua | 3 -
src/external/lua-5.1.5/test/life.lua | 111 -
src/external/lua-5.1.5/test/luac.lua | 7 -
src/external/lua-5.1.5/test/printf.lua | 7 -
src/external/lua-5.1.5/test/readonly.lua | 12 -
src/external/lua-5.1.5/test/sieve.lua | 29 -
src/external/lua-5.1.5/test/sort.lua | 66 -
src/external/lua-5.1.5/test/table.lua | 12 -
src/external/lua-5.1.5/test/trace-calls.lua | 32 -
src/external/lua-5.1.5/test/trace-globals.lua | 38 -
src/external/lua-5.1.5/test/xd.lua | 14 -
src/external/luafilesystem-1.5.0/Makefile | 22 -
src/external/luafilesystem-1.5.0/Makefile.win | 25 -
src/external/luafilesystem-1.5.0/README | 66 -
src/external/luafilesystem-1.5.0/config | 24 -
src/external/luafilesystem-1.5.0/config.win | 19 -
.../luafilesystem-1.5.0/doc/us/examples.html | 103 -
src/external/luafilesystem-1.5.0/doc/us/index.html | 192 -
.../luafilesystem-1.5.0/doc/us/license.html | 122 -
.../luafilesystem-1.5.0/doc/us/luafilesystem.png | Bin 8535 -> 0 bytes
.../luafilesystem-1.5.0/doc/us/manual.html | 271 -
.../rockspecs/luafilesystem-1.3.0-1.rockspec | 27 -
.../rockspecs/luafilesystem-1.4.0-1.rockspec | 27 -
.../rockspecs/luafilesystem-1.4.0-2.rockspec | 43 -
.../rockspecs/luafilesystem-1.4.1-1.rockspec | 43 -
.../rockspecs/luafilesystem-1.4.1rc1-1.rockspec | 43 -
.../rockspecs/luafilesystem-1.4.2-1.rockspec | 26 -
.../rockspecs/luafilesystem-1.5.0-1.rockspec | 27 -
.../rockspecs/luafilesystem-cvs-1.rockspec | 44 -
.../rockspecs/luafilesystem-cvs-2.rockspec | 26 -
src/external/luafilesystem-1.5.0/src/lfs.c | 802 -
src/external/luafilesystem-1.5.0/src/lfs.def | 5 -
src/external/luafilesystem-1.5.0/src/lfs.h | 17 -
src/external/luafilesystem-1.5.0/tests/test.lua | 130 -
src/external/luafilesystem-1.5.0/vc6/lfs.def | 5 -
.../luafilesystem-1.5.0/vc6/luafilesystem.dsw | 33 -
.../luafilesystem-1.5.0/vc6/luafilesystem_dll.dsp | 127 -
src/external/md5-1.1.2/Makefile | 37 -
src/external/md5-1.1.2/Makefile.win | 35 -
src/external/md5-1.1.2/README | 32 -
src/external/md5-1.1.2/config | 32 -
src/external/md5-1.1.2/config.win | 23 -
src/external/md5-1.1.2/configure | 27 -
src/external/md5-1.1.2/doc/us/index.html | 172 -
src/external/md5-1.1.2/doc/us/license.html | 122 -
src/external/md5-1.1.2/doc/us/manual.html | 229 -
src/external/md5-1.1.2/doc/us/md5.png | Bin 4121 -> 0 bytes
.../md5-1.1.2/rockspec/md5-1.1.1-1.rockspec | 31 -
.../md5-1.1.2/rockspec/md5-1.1.2-1.rockspec | 39 -
src/external/md5-1.1.2/rockspec/md5-cvs-1.rockspec | 39 -
src/external/md5-1.1.2/src/des56.c | 548 -
src/external/md5-1.1.2/src/des56.def | 5 -
src/external/md5-1.1.2/src/des56.h | 77 -
src/external/md5-1.1.2/src/ldes56.c | 152 -
src/external/md5-1.1.2/src/ldes56.h | 1 -
src/external/md5-1.1.2/src/md5.c | 214 -
src/external/md5-1.1.2/src/md5.def | 5 -
src/external/md5-1.1.2/src/md5.h | 20 -
src/external/md5-1.1.2/src/md5lib.c | 203 -
src/external/md5-1.1.2/tests/DES56/Makefile | 30 -
src/external/md5-1.1.2/tests/DES56/fdemo.c | 178 -
src/external/md5-1.1.2/tests/DES56/ftest.c | 211 -
src/external/md5-1.1.2/tests/test.lua | 109 -
src/external/md5-1.1.2/vc6/md5.def | 5 -
src/external/md5-1.1.2/vc6/md5.dsw | 33 -
src/external/md5-1.1.2/vc6/md5_dll.dsp | 130 -
src/external/samtools-0.1.18/AUTHORS | 20 -
src/external/samtools-0.1.18/COPYING | 21 -
src/external/samtools-0.1.18/ChangeLog | 5948 -
src/external/samtools-0.1.18/INSTALL | 30 -
src/external/samtools-0.1.18/Makefile | 93 -
src/external/samtools-0.1.18/Makefile.mingw | 63 -
src/external/samtools-0.1.18/NEWS | 806 -
src/external/samtools-0.1.18/bam.c | 362 -
src/external/samtools-0.1.18/bam.h | 767 -
src/external/samtools-0.1.18/bam2bcf.c | 351 -
src/external/samtools-0.1.18/bam2bcf.h | 57 -
src/external/samtools-0.1.18/bam2bcf_indel.c | 475 -
src/external/samtools-0.1.18/bam2depth.c | 112 -
src/external/samtools-0.1.18/bam_aux.c | 213 -
src/external/samtools-0.1.18/bam_cat.c | 184 -
src/external/samtools-0.1.18/bam_color.c | 127 -
src/external/samtools-0.1.18/bam_endian.h | 42 -
src/external/samtools-0.1.18/bam_import.c | 485 -
src/external/samtools-0.1.18/bam_index.c | 719 -
src/external/samtools-0.1.18/bam_lpileup.c | 198 -
src/external/samtools-0.1.18/bam_mate.c | 70 -
src/external/samtools-0.1.18/bam_md.c | 384 -
src/external/samtools-0.1.18/bam_pileup.c | 437 -
src/external/samtools-0.1.18/bam_plcmd.c | 546 -
src/external/samtools-0.1.18/bam_reheader.c | 61 -
src/external/samtools-0.1.18/bam_rmdup.c | 206 -
src/external/samtools-0.1.18/bam_rmdupse.c | 159 -
src/external/samtools-0.1.18/bam_sort.c | 438 -
src/external/samtools-0.1.18/bam_stat.c | 77 -
src/external/samtools-0.1.18/bam_tview.c | 440 -
src/external/samtools-0.1.18/bamtk.c | 109 -
src/external/samtools-0.1.18/bcftools/Makefile | 51 -
src/external/samtools-0.1.18/bcftools/README | 36 -
src/external/samtools-0.1.18/bcftools/bcf.c | 328 -
src/external/samtools-0.1.18/bcftools/bcf.h | 190 -
src/external/samtools-0.1.18/bcftools/bcf.tex | 77 -
src/external/samtools-0.1.18/bcftools/bcf2qcall.c | 91 -
src/external/samtools-0.1.18/bcftools/bcfutils.c | 390 -
src/external/samtools-0.1.18/bcftools/call1.c | 586 -
src/external/samtools-0.1.18/bcftools/em.c | 310 -
src/external/samtools-0.1.18/bcftools/fet.c | 112 -
src/external/samtools-0.1.18/bcftools/index.c | 335 -
src/external/samtools-0.1.18/bcftools/kfunc.c | 162 -
src/external/samtools-0.1.18/bcftools/kmin.c | 209 -
src/external/samtools-0.1.18/bcftools/kmin.h | 46 -
src/external/samtools-0.1.18/bcftools/main.c | 190 -
src/external/samtools-0.1.18/bcftools/mut.c | 127 -
src/external/samtools-0.1.18/bcftools/prob1.c | 554 -
src/external/samtools-0.1.18/bcftools/prob1.h | 42 -
src/external/samtools-0.1.18/bcftools/vcf.c | 244 -
src/external/samtools-0.1.18/bcftools/vcfutils.pl | 567 -
src/external/samtools-0.1.18/bedidx.c | 162 -
src/external/samtools-0.1.18/bgzf.c | 717 -
src/external/samtools-0.1.18/bgzf.h | 167 -
src/external/samtools-0.1.18/bgzip.c | 206 -
src/external/samtools-0.1.18/cut_target.c | 193 -
src/external/samtools-0.1.18/errmod.c | 130 -
src/external/samtools-0.1.18/errmod.h | 24 -
src/external/samtools-0.1.18/examples/00README.txt | 23 -
src/external/samtools-0.1.18/examples/Makefile | 50 -
src/external/samtools-0.1.18/examples/bam2bed.c | 51 -
src/external/samtools-0.1.18/examples/calDepth.c | 62 -
src/external/samtools-0.1.18/examples/ex1.fa | 56 -
src/external/samtools-0.1.18/examples/ex1.sam.gz | Bin 114565 -> 0 bytes
src/external/samtools-0.1.18/examples/toy.fa | 4 -
src/external/samtools-0.1.18/examples/toy.sam | 14 -
src/external/samtools-0.1.18/faidx.c | 432 -
src/external/samtools-0.1.18/faidx.h | 103 -
src/external/samtools-0.1.18/kaln.c | 486 -
src/external/samtools-0.1.18/kaln.h | 67 -
src/external/samtools-0.1.18/khash.h | 528 -
src/external/samtools-0.1.18/klist.h | 96 -
src/external/samtools-0.1.18/knetfile.c | 632 -
src/external/samtools-0.1.18/knetfile.h | 75 -
src/external/samtools-0.1.18/kprobaln.c | 278 -
src/external/samtools-0.1.18/kprobaln.h | 49 -
src/external/samtools-0.1.18/kseq.h | 224 -
src/external/samtools-0.1.18/ksort.h | 281 -
src/external/samtools-0.1.18/kstring.c | 212 -
src/external/samtools-0.1.18/kstring.h | 117 -
src/external/samtools-0.1.18/misc/HmmGlocal.java | 178 -
src/external/samtools-0.1.18/misc/Makefile | 63 -
src/external/samtools-0.1.18/misc/blast2sam.pl | 92 -
src/external/samtools-0.1.18/misc/bowtie2sam.pl | 92 -
src/external/samtools-0.1.18/misc/export2sam.pl | 545 -
.../samtools-0.1.18/misc/interpolate_sam.pl | 125 -
src/external/samtools-0.1.18/misc/maq2sam.c | 173 -
src/external/samtools-0.1.18/misc/md5.c | 296 -
src/external/samtools-0.1.18/misc/md5.h | 57 -
src/external/samtools-0.1.18/misc/md5fa.c | 58 -
src/external/samtools-0.1.18/misc/novo2sam.pl | 281 -
src/external/samtools-0.1.18/misc/psl2sam.pl | 65 -
src/external/samtools-0.1.18/misc/sam2vcf.pl | 270 -
src/external/samtools-0.1.18/misc/samtools.pl | 528 -
src/external/samtools-0.1.18/misc/seqtk.c | 783 -
src/external/samtools-0.1.18/misc/soap2sam.pl | 109 -
src/external/samtools-0.1.18/misc/varfilter.py | 205 -
src/external/samtools-0.1.18/misc/wgsim.c | 419 -
src/external/samtools-0.1.18/misc/wgsim_eval.pl | 91 -
src/external/samtools-0.1.18/misc/zoom2sam.pl | 97 -
src/external/samtools-0.1.18/phase.c | 687 -
src/external/samtools-0.1.18/razf.c | 853 -
src/external/samtools-0.1.18/razf.h | 134 -
src/external/samtools-0.1.18/razip.c | 141 -
src/external/samtools-0.1.18/sam.c | 179 -
src/external/samtools-0.1.18/sam.h | 100 -
src/external/samtools-0.1.18/sam_header.c | 736 -
src/external/samtools-0.1.18/sam_header.h | 24 -
src/external/samtools-0.1.18/sam_view.c | 406 -
src/external/samtools-0.1.18/sample.c | 107 -
src/external/samtools-0.1.18/sample.h | 17 -
src/external/samtools-0.1.18/win32/xcurses.h | 1377 -
src/external/samtools-0.1.18/win32/zconf.h | 332 -
src/external/samtools-0.1.18/win32/zlib.h | 1357 -
src/external/sqlite-3.8.7.1/sqlite3.c | 151638 ------------------
src/external/sqlite-3.8.7.1/sqlite3.h | 7543 -
src/external/sqlite-3.8.7.1/sqlite3ext.h | 517 -
src/external/tre/.gitignore | 26 -
src/external/tre/LICENSE | 29 -
src/external/tre/README | 235 -
src/external/tre/include/tre/tre-config.h | 196 -
src/external/tre/include/tre/tre.h | 276 -
src/external/tre/lib/README | 69 -
src/external/tre/lib/regcomp.c | 129 -
src/external/tre/lib/regerror.c | 83 -
src/external/tre/lib/regex.h | 38 -
src/external/tre/lib/regexec.c | 348 -
src/external/tre/lib/tre-ast.c | 226 -
src/external/tre/lib/tre-ast.h | 129 -
src/external/tre/lib/tre-compile.c | 2297 -
src/external/tre/lib/tre-compile.h | 27 -
src/external/tre/lib/tre-config.h.in | 43 -
src/external/tre/lib/tre-filter.c | 73 -
src/external/tre/lib/tre-filter.h | 19 -
src/external/tre/lib/tre-internal.h | 287 -
src/external/tre/lib/tre-match-backtrack.c | 666 -
src/external/tre/lib/tre-match-parallel.c | 502 -
src/external/tre/lib/tre-match-utils.h | 215 -
src/external/tre/lib/tre-mem.c | 156 -
src/external/tre/lib/tre-mem.h | 66 -
src/external/tre/lib/tre-parse.c | 1739 -
src/external/tre/lib/tre-parse.h | 50 -
src/external/tre/lib/tre-stack.c | 125 -
src/external/tre/lib/tre-stack.h | 76 -
src/external/tre/lib/tre.h | 276 -
src/external/tre/lib/xmalloc.c | 352 -
src/external/tre/lib/xmalloc.h | 77 -
src/external/zlib-1.2.8/README | 115 -
src/external/zlib-1.2.8/adler32.c | 179 -
src/external/zlib-1.2.8/compress.c | 80 -
src/external/zlib-1.2.8/crc32.c | 425 -
src/external/zlib-1.2.8/crc32.h | 441 -
src/external/zlib-1.2.8/deflate.c | 1967 -
src/external/zlib-1.2.8/deflate.h | 346 -
src/external/zlib-1.2.8/gzclose.c | 25 -
src/external/zlib-1.2.8/gzguts.h | 209 -
src/external/zlib-1.2.8/gzlib.c | 634 -
src/external/zlib-1.2.8/gzread.c | 594 -
src/external/zlib-1.2.8/gzwrite.c | 577 -
src/external/zlib-1.2.8/infback.c | 640 -
src/external/zlib-1.2.8/inffast.c | 340 -
src/external/zlib-1.2.8/inffast.h | 11 -
src/external/zlib-1.2.8/inffixed.h | 94 -
src/external/zlib-1.2.8/inflate.c | 1512 -
src/external/zlib-1.2.8/inflate.h | 122 -
src/external/zlib-1.2.8/inftrees.c | 306 -
src/external/zlib-1.2.8/inftrees.h | 62 -
src/external/zlib-1.2.8/trees.c | 1226 -
src/external/zlib-1.2.8/trees.h | 128 -
src/external/zlib-1.2.8/uncompr.c | 59 -
src/external/zlib-1.2.8/zconf.h | 513 -
src/external/zlib-1.2.8/zlib.h | 1768 -
src/external/zlib-1.2.8/zutil.c | 324 -
src/external/zlib-1.2.8/zutil.h | 253 -
483 files changed, 289898 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/genometools.git
More information about the debian-med-commit
mailing list