[med-svn] [python-pysam] annotated tag debian/0.9.0+ds-1 created (now 079d3d5)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to annotated tag debian/0.9.0+ds-1
in repository python-pysam.

        at  079d3d5   (tag)
   tagging  09caf28c05422ed04efa89129180ba9996d8d547 (commit)
  replaces  debian/0.8.3-1
 tagged by  Afif Elghraoui
        on  Wed Mar 9 23:49:12 2016 -0800

- Log -----------------------------------------------------------------
python-pysam (0.9.0+ds-1) unstable; urgency=medium

  * Add filenamemangle to d/watch and space out content
  * Imported Upstream version 0.9.0+ds (Closes: #814765)
  * Bump htslib and samtools minimum versions
  * Update policy statndards-version to 3.9.7
  * Use encrypted protocols for Vcs URLs in d/control
  * Use readthedocs page as pysam's homepage
  * Update packaging for external htslib link
  * Refresh patches
  * Delete obsolete patch
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Afif Elghraoui (84):
      Exclude bundled htslib convenience-copy
      Provide get-orig-source rule
      Imported Upstream version 0.8.3+ds1
      Merge tag 'upstream/0.8.3+ds1'
      Support building with missing htslib directory
      Add dependency on cython for autopkgtests to provide pyximport
      Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-pysam
      Revamp debian/copyright
      Package ready for round-2 review
      Improve python3 compatibility for upstream test sources
      Package ready for review for unstable
      Revamp packaging of test data
      refresh older patches
      Fix autopkgtests
      Remove unnecessary symlinks
      Do not provide test data package
      Update changelog
      Revert "Fix autopkgtests"
      Revert "Revamp packaging of test data"
      Remove extraneous test dependencies already included by @
      Build test data in d/rules
      List more test dependencies
      Merge branch 'separate-tests-package'
      Don't build test data at the samae time as the package sources
      Move test directory cleaning commands to a separate recipe
      Fix error in sam_mpileup.patch
      Remove ex1.bam hack since it is apparently being created without it
      Delete __pycache__ directory in clean-tests recipe
      Add myself to uploaders
      Remove unused lintian override
      Update changelog - ready for upload
      Forward mpileup patch upstream
      Indicate patch independently created upstream
      Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/python-pysam
      Set up new revision
      Backport upstream commit 6efb22b to permit building with Cython 0.23.x
      Revise python3 lintian overrides
      Add lintian override for timestamped archive in python-pysam-tests
      python-pysam (0.8.3+ds1-3) unstable; urgency=medium
      Add version constraints to d/control
      Add changelog entry for next release
      Drom ds suffix versioning
      Prepare for next version to drop ds version suffix
      Update changelog for new release
      Imported Upstream version 0.8.4+ds
      Merge tag 'upstream/0.8.4+ds'
      Remove patches applied upstream
      Refresh existing patches
      Use pre-defined variables from dpkg rather than manually scraping changelog
      Remove unnecessary rule override in d/rules
      Set Vcs-Browser to point to cgit rather than gitweb
      Reduce dependencies in autopktest dependencies
      Replace patch for network-dependent tests
      Add more lintian overrides
      Refine testing in d/rules
      python-pysam (0.8.4+ds-1) unstable; urgency=medium
      Add filenamemangle to d/watch and space out content
      Imported Upstream version 0.9.0+ds
      Merge tag 'upstream/0.9.0+ds'
      Bump htslib and samtools minimum versions
      Update policy statndards-version to 3.9.7
      Use encrypted protocols for Vcs URLs in d/control
      Use readthedocs page as pysam's homepage
      Update packaging for external htslib link due to build system changes
      Refresh patches
      Delete obsolete patch
      Prepare new revision
      Update patch for external HTSlib
      Update d/rules clean target
      Update python-pysam-test lintian overrides
      Update d/rules to allow package to build
      Clean up d/control
      Support running tests requiring bcftools
      Add copyright information for debian/*
      Remove trailing whitespace from d/copyright
      Update d/copyright
      Disable setting rpath for compiled modules
      Remove copyright declaration for nonexistent files
      Add tabix as build-dependency to run tests
      Document remaining steps to take before upload
      Completely fix rpath issue
      Fix some failing tests
      Update autopkgtest command and dependencies
      Finalize changelog

Andreas Tille (16):
      d/watch: dversionmangle
      Upload to experimental
      Add missing license field
      For the moment do some dirty tricks in test run script
      Add nosetest build time testing (but zero tests executed - ask at debian-python list)
      Try enhancing build time testing
      Fix clean target
      Fix syntax in test override
      Samtools 1.2 is required
      samtools says:   The `pileup' command has been removed. Please use `mpileup' instead.
      Tests are triggered by nosetest
      Provide file tests/ex1.bam that is required in nosetest
      Remove tests relying on online connection from test suite
      Test suite for Python 3.4 needs a strange hack to rename *.so libraries.  Otherwise these are not found.  Help will be requested on this issue
      The automatic nosetest trigger does not work and this it is switched back to manual nosetests invocation
      Upload to install and make Afif changelog owner for this upload

-----------------------------------------------------------------------

This annotated tag includes the following new commits:

       new  c47196e   Completely fix rpath issue
       new  624c346   Fix some failing tests
       new  13efc4e   Update autopkgtest command and dependencies
       new  09caf28   Finalize changelog

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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