[med-svn] [vsearch] branch upstream updated (5cfd47e -> b2a6636)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository vsearch.

      from  5cfd47e   Imported Upstream version 1.9.10
       new  b2a6636   Imported Upstream version 1.10.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                       |    9 +-
 configure                       |   20 +-
 configure.ac                    |    2 +-
 man/vsearch.1                   |  171 +-
 src/Makefile.am                 |    5 +-
 src/Makefile.in                 |   22 +-
 src/chimera.cc                  |  135 +-
 src/eestats.cc                  |  337 +++
 src/{sortbysize.h => eestats.h} |    2 +-
 src/fasta.cc                    |   84 +-
 src/fasta.h                     |   11 +
 src/fastq.cc                    |    9 +-
 src/mask.cc                     |    4 +
 src/mergepairs.cc               |  933 ++++----
 src/msa.cc                      |   71 +-
 src/pvalue.h                    | 4843 ---------------------------------------
 src/{shuffle.cc => rerep.cc}    |   72 +-
 src/{sortbysize.h => rerep.h}   |    2 +-
 src/util.cc                     |   25 +-
 src/vsearch.cc                  |  242 +-
 src/vsearch.h                   |   13 +-
 21 files changed, 1405 insertions(+), 5607 deletions(-)
 create mode 100644 src/eestats.cc
 copy src/{sortbysize.h => eestats.h} (99%)
 delete mode 100644 src/pvalue.h
 copy src/{shuffle.cc => rerep.cc} (70%)
 copy src/{sortbysize.h => rerep.h} (99%)

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