[med-svn] [tantan] 02/04: add autopkgtest

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

sascha-guest pushed a commit to branch master
in repository tantan.

commit c94f388c96c8a8ebe2e085fb7594880a74962cf9
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sat Mar 12 09:52:40 2016 +0000

    add autopkgtest
---
 debian/changelog          |   1 +
 debian/control            |   1 +
 debian/tests/control      |   3 +
 debian/tests/nuc.fasta    | 200 ++++++++++++++++++++++++++++++++++++++++++++++
 debian/tests/prot.fasta   |   5 ++
 debian/tests/test-example |  27 +++++++
 6 files changed, 237 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index dd48983..7fc1bd0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 tantan (13-3) unstable; urgency=medium
 
   * Bump Standards-Version.
+  * Add autopkgtest.
 
  -- Sascha Steinbiss <sascha at steinbiss.name>  Sat, 12 Mar 2016 08:47:30 +0000
 
diff --git a/debian/control b/debian/control
index 564082f..bbf46c8 100644
--- a/debian/control
+++ b/debian/control
@@ -5,6 +5,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
 Build-Depends: debhelper (>= 9)
 Standards-Version: 3.9.7
+Testsuite: autopkgtest
 Homepage: http://www.cbrc.jp/tantan/
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/tantan.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/tantan.git
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..49d3f07
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: test-example
+Depends: @
+Restrictions: allow-stderr
diff --git a/debian/tests/nuc.fasta b/debian/tests/nuc.fasta
new file mode 100644
index 0000000..e4d5a86
--- /dev/null
+++ b/debian/tests/nuc.fasta
@@ -0,0 +1,200 @@
+>ref
+taaccctaaccctaaccctgaccctaaccctaaccctaaccctaaccctaaccagtacac
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+caatgctctttgataaacgtgcggacatgaaaaaaagggaaaaacgcagctacgtgtgct
+gtcgttggtttcacagcgtcaagccgcgtcggtgtaccaaagaggaggtgacccatcgag
+tactcgcaccctctagctctccttttctgcctcgtattatacacgttgatcggaaaacag
+ggtaggcactagccaccgataatcttcaatcgtacatctgtctgcgtaagcgcgtgcccc
+ggatggagggcatggaactgcatcgaccgcccacggcgatcgccgatcagccagcgatgt
+gactgcaacgctgtttgtttccacaacgagggctgaaggctttctgatagattgtgcgct
+atagaacaaggagggagagcccacccctttttatgcgaaaactcctcacccaaagcaagg
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diff --git a/debian/tests/prot.fasta b/debian/tests/prot.fasta
new file mode 100644
index 0000000..b0cb561
--- /dev/null
+++ b/debian/tests/prot.fasta
@@ -0,0 +1,5 @@
+>test
+RCTHYLFIVVVAVNSTLLTINAGDYIFYTDWAWTSFVVFSISQTLMLTVGACYYLTFTGV
+PGTATYYALIMTVYTWIAKGAWFALGYPYDFIVTPVWLPSAMLLDLAYWATKKNKHSLIL
+FGGVLVGMSLPLFNMVNLITVADPLETAFKYPRPTLPVAVAVAVAVAVAVAAVAAVVAAP
+YMTPIEPQVGKFYNSPVALGAGAGAVLACTFAALGCKLTTWT
\ No newline at end of file
diff --git a/debian/tests/test-example b/debian/tests/test-example
new file mode 100755
index 0000000..a06fd2f
--- /dev/null
+++ b/debian/tests/test-example
@@ -0,0 +1,27 @@
+#!/bin/sh
+# autopkgtest check: Run small test data through tantan
+# Author: Sascha Steinbiss <sascha at steinbiss.name>
+set -e
+
+ORIGDIR=$(pwd)
+DATADIR=$ORIGDIR/debian/tests/
+WORKDIR=$(mktemp -d)
+
+trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
+cd $WORKDIR
+
+tantan < $DATADIR/nuc.fasta > 1
+tantan $DATADIR/nuc.fasta > 2
+
+[ -s 1 ]
+[ -s 2 ]
+
+diff 1 2
+
+tantan -p < $DATADIR/prot.fasta > 1
+tantan -p $DATADIR/prot.fasta > 2
+
+[ -s 1 ]
+[ -s 2 ]
+
+diff 1 2
\ No newline at end of file

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/tantan.git