[med-svn] [bowtie2] 01/01: releasing package bowtie2 version 2.2.8-1

[Alex Mestiashvili]

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malex-guest pushed a commit to tag debian/2.2.8-1
in repository bowtie2.

commit 0698da15ce3869ab54be77618f4785936ee43b72
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Sat Mar 12 16:57:31 2016 +0100

    releasing package bowtie2 version 2.2.8-1
---
 Makefile                       | 3 ++-
 debian/patches/hardening.patch | 6 +++---
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/Makefile b/Makefile
index 667eda1..c64334f 100644
--- a/Makefile
+++ b/Makefile
@@ -254,7 +254,8 @@ DEFS=-fno-strict-aliasing \
      $(FILE_FLAGS) \
      $(PREF_DEF) \
      $(MM_DEF) \
-     $(SHMEM_DEF)
+     $(SHMEM_DEF)\
+     $(CPPFLAGS)
 
 #
 # bowtie2-build targets
diff --git a/debian/patches/hardening.patch b/debian/patches/hardening.patch
index 54a1811..63cac4c 100644
--- a/debian/patches/hardening.patch
+++ b/debian/patches/hardening.patch
@@ -2,9 +2,9 @@ Description: Patch injects hardening CPPFLAGS
 Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
 Origin: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Last-Update: Mon, 30 Jul 2012 13:51:31 +0200
---- a/Makefile
-+++ b/Makefile
-@@ -250,7 +250,8 @@ DEFS=-fno-strict-aliasing \
+--- bowtie2.orig/Makefile
++++ bowtie2/Makefile
+@@ -254,7 +254,8 @@
       $(FILE_FLAGS) \
       $(PREF_DEF) \
       $(MM_DEF) \

-- 
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