[med-svn] [bwa] branch master updated (502ebba -> b67632f)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository bwa.

      from  502ebba   Fix typo in changelog and upload to unstable
       new  11ce18b   Imported Upstream version 0.7.13
       new  f3a990b   Merge tag 'upstream/0.7.13'
       new  c1809c1   New upstream version
       new  b9982e4   cme fix dpkg-control
       new  b67632f   Upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore            |   7 ++
 .travis.yml           |   5 +
 Makefile              |  15 ++-
 NEWS.md               |  29 +++++
 README-alt.md         |   2 +-
 bwa.1                 |   7 +-
 bwa.h                 |   7 ++
 bwakit/README.md      |   2 +-
 bwakit/bwa-postalt.js |   2 +-
 bwakit/run-gen-ref    |   2 +-
 bwamem.c              |  19 +--
 bwamem.h              |   2 -
 bwamem_extra.c        |  25 ----
 bwape.c               |   2 +-
 bwase.c               |   1 +
 bwtindex.c            |  91 ++++++++++-----
 debian/changelog      |   7 ++
 debian/control        |   8 +-
 fastmap.c             |  22 +---
 kthread.c             |  19 +--
 main.c                |   4 +-
 maxk.c                |  67 +++++++++++
 qualfa2fq.pl          |   2 +-
 rle.c                 | 191 ++++++++++++++++++++++++++++++
 rle.h                 |  77 ++++++++++++
 rope.c                | 318 ++++++++++++++++++++++++++++++++++++++++++++++++++
 rope.h                |  58 +++++++++
 xa2multi.pl           |   2 +-
 28 files changed, 875 insertions(+), 118 deletions(-)
 create mode 100644 .gitignore
 create mode 100644 .travis.yml
 create mode 100644 maxk.c
 create mode 100644 rle.c
 create mode 100644 rle.h
 create mode 100644 rope.c
 create mode 100644 rope.h

-- 
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