[med-svn] [bwa] branch debian/jessie-backports updated (7ae8f2e -> cd266f5)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch debian/jessie-backports
in repository bwa.

      from  7ae8f2e   Fix version number
      adds  d0080a6   start libbwa-dev package
      adds  7347c69   Increment Debian release number
      adds  502ebba   Fix typo in changelog and upload to unstable
      adds  11ce18b   Imported Upstream version 0.7.13
      adds  f3a990b   Merge tag 'upstream/0.7.13'
      adds  c1809c1   New upstream version
      adds  b9982e4   cme fix dpkg-control
      adds  b67632f   Upload to unstable
       new  55dcc11   Merge branch 'master' into debian/jessie-backports
       new  cd266f5   Build for Jessie backports

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                |   7 +
 .travis.yml               |   5 +
 Makefile                  |  15 ++-
 NEWS.md                   |  29 +++++
 README-alt.md             |   2 +-
 bwa.1                     |   7 +-
 bwa.h                     |   7 +
 bwakit/README.md          |   2 +-
 bwakit/bwa-postalt.js     |   2 +-
 bwakit/run-gen-ref        |   2 +-
 bwamem.c                  |  19 +--
 bwamem.h                  |   2 -
 bwamem_extra.c            |  25 ----
 bwape.c                   |   2 +-
 bwase.c                   |   1 +
 bwtindex.c                |  91 ++++++++-----
 debian/changelog          |  19 +++
 debian/control            |  31 ++++-
 debian/libbwa-dev.install |   9 ++
 fastmap.c                 |  22 +---
 kthread.c                 |  19 +--
 main.c                    |   4 +-
 maxk.c                    |  67 ++++++++++
 qualfa2fq.pl              |   2 +-
 rle.c                     | 191 ++++++++++++++++++++++++++++
 rle.h                     |  77 +++++++++++
 rope.c                    | 318 ++++++++++++++++++++++++++++++++++++++++++++++
 rope.h                    |  58 +++++++++
 xa2multi.pl               |   2 +-
 29 files changed, 918 insertions(+), 119 deletions(-)
 create mode 100644 .gitignore
 create mode 100644 .travis.yml
 create mode 100644 debian/libbwa-dev.install
 create mode 100644 maxk.c
 create mode 100644 rle.c
 create mode 100644 rle.h
 create mode 100644 rope.c
 create mode 100644 rope.h

-- 
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