[med-svn] [tophat] 01/06: Don't install 3rd party software together with tophat

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository tophat.

commit c4a83b3b99a5d1dcaaf89482e1383ea0dcf14830
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Mar 17 17:02:57 2016 +0100

    Don't install 3rd party software together with tophat
---
 debian/patches/remove_3rd_party_code.patch | 11 +++++++++++
 debian/patches/series                      |  1 +
 2 files changed, 12 insertions(+)

diff --git a/debian/patches/remove_3rd_party_code.patch b/debian/patches/remove_3rd_party_code.patch
new file mode 100644
index 0000000..fed61a7
--- /dev/null
+++ b/debian/patches/remove_3rd_party_code.patch
@@ -0,0 +1,11 @@
+Subject: remove 3rd party embeded software from the package
+From: Alex Mestiashvili <mailatgoogl at gmail.com>
+--- tophat.orig/src/Makefile.am
++++ tophat/src/Makefile.am
+@@ -853,6 +853,3 @@
+ 
+ $(SAMLIB):
+ 	cd $(SAMDIR) && make $(SAMPROG) && cp $(SAMLIB) $(SAMPROG) ..
+-
+-install-data-hook:
+-	cp -r intervaltree sortedcontainers $(DESTDIR)$(bindir)
diff --git a/debian/patches/series b/debian/patches/series
index 3f22e5f..0d4992a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
+remove_3rd_party_code.patch
 fix_includes_path.patch
 hardening4samtools.patch

-- 
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