[med-svn] [dindel] 01/03: Hardening; Add upstream-contact

[Andreas Tille]

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tille pushed a commit to branch master
in repository dindel.

commit ae15f3663bad89951fb8b11fa0c652b3ac8e5d4c
Author: Andreas Tille <tille at debian.org>
Date:   Sat Mar 19 13:10:34 2016 +0100

    Hardening; Add upstream-contact
---
 debian/copyright                        | 1 +
 debian/patches/modernize-Makefile.patch | 8 +++++---
 debian/rules                            | 2 ++
 3 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/debian/copyright b/debian/copyright
index 40ec472..3773978 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,5 +1,6 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: dindel
+Upstream-Contact: caa at sanger.ac.uk
 Source: https://sites.google.com/site/keesalbers/soft/dindel
 
 Files: *
diff --git a/debian/patches/modernize-Makefile.patch b/debian/patches/modernize-Makefile.patch
index f223160..6a129dd 100644
--- a/debian/patches/modernize-Makefile.patch
+++ b/debian/patches/modernize-Makefile.patch
@@ -10,10 +10,12 @@ Description: Use Debian packaged libraries
 +SAMTOOLDIR=/usr/include/samtools
 +SEQANDIR=/usr/include/seqan
  
- CPPFLAGS= -DNDEBUG -D_IOLIB=2 -DMINREADS=2 -DDINDEL
- CXXFLAGS= -I$(SAMTOOLDIR) -I$(SEQANDIR) -I./  -Wno-deprecated  -O3 
+-CPPFLAGS= -DNDEBUG -D_IOLIB=2 -DMINREADS=2 -DDINDEL
+-CXXFLAGS= -I$(SAMTOOLDIR) -I$(SEQANDIR) -I./  -Wno-deprecated  -O3 
 -LDFLAGS= -L$(SAMTOOLDIR)  -lbam -lz -lboost_program_options -static 
-+LDFLAGS=  -lbam -lz -lboost_program_options -lpthread
++CPPFLAGS+= -DNDEBUG -D_IOLIB=2 -DMINREADS=2 -DDINDEL
++CXXFLAGS+= -I$(SAMTOOLDIR) -I$(SEQANDIR) -I./  -Wno-deprecated  -O3 
++LDFLAGS+=  -lbam -lz -lboost_program_options -lpthread
  
  SRCSDINDEL=DInDel.cpp HapBlock.cpp HaplotypeDistribution.cpp ObservationModelFB.cpp GetCandidates.cpp Faster.cpp
  OBJSDINDEL=$(SRCSDINDEL:%.cpp=%.o)  
diff --git a/debian/rules b/debian/rules
index d003324..3d7a5ed 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,5 +1,7 @@
 #!/usr/bin/make -f
 # -*- makefile -*-
 
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+
 %:
 	dh $@ 

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