[med-svn] [gnumed-server] branch upstream updated (8c2ac71 -> e63f6d1)
Andreas Tille
tille at debian.org
Sat Mar 19 14:22:19 UTC 2016
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tille pushed a change to branch upstream
in repository gnumed-server.
from 8c2ac71 Imported Upstream version 20.10
new e63f6d1 Imported Upstream version 21.0
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
server/bootstrap/bootstrap-latest.bat | 6 +-
server/bootstrap/bootstrap-latest.conf | 1 +
server/bootstrap/bootstrap-latest.sh | 6 +-
server/bootstrap/bootstrap_gm_db_system.py | 54 +-
server/bootstrap/fixup_db-v20.conf | 1 +
.../{fixup_db-v20.conf => fixup_db-v21.conf} | 28 +-
server/bootstrap/gmAuditSchemaGenerator.py | 331 +-
server/bootstrap/gmDBPruningDMLGenerator.py | 8 +-
server/bootstrap/update_db-v19_v20.conf | 1 +
server/bootstrap/update_db-v20_v21.conf | 326 +
server/doc/{gm-backup_database.8 => gm-backup.8} | 17 +-
server/doc/gm-restore_database_from_archive.8 | 35 +
.../doc/schema/gnumed-entire_schema-no_audit.dot | 285 +-
server/doc/schema/gnumed-entire_schema.html | 68329 ++++++++++++-------
server/etc/gnumed/gnumed-backup.conf.example | 2 +-
...ed-restore.conf.example => gnumed-restore.conf} | 11 +-
server/gm-adjust_db_settings.sh | 25 +-
server/{gm-backup_database.sh => gm-backup.sh} | 32 +-
server/gm-backup_data.sh | 2 +-
server/gm-backup_database.sh | 4 +-
server/gm-fingerprint_db.py | 27 +-
server/gm-restore_database.sh | 2 +
...base.sh => gm-restore_database_from_archive.sh} | 130 +-
server/pycommon/gmBackendListener.py | 79 +-
server/pycommon/gmBorg.py | 27 +-
server/pycommon/gmBusinessDBObject.py | 94 +-
server/pycommon/gmCfg.py | 12 +-
server/pycommon/gmCfg2.py | 66 +-
server/pycommon/gmConfigCommon.py | 872 -
server/pycommon/gmDateTime.py | 191 +-
server/pycommon/gmDispatcher.py | 67 +-
server/pycommon/gmExceptions.py | 53 +-
server/pycommon/gmGuiBroker.py | 146 +-
server/pycommon/gmHooks.py | 15 +-
server/pycommon/gmI18N.py | 43 +-
server/pycommon/gmLog2.py | 9 +-
server/pycommon/gmLoginInfo.py | 11 +-
server/pycommon/gmMatchProvider.py | 12 +-
server/pycommon/gmMimeLib.py | 115 +-
server/pycommon/gmMimeMagic.py | 35 +-
server/pycommon/gmNetworkTools.py | 21 +-
server/pycommon/gmNull.py | 15 +-
server/pycommon/gmPG2.py | 344 +-
server/pycommon/gmPrinting.py | 36 +-
server/pycommon/gmPsql.py | 78 +-
server/pycommon/gmScanBackend.py | 19 +-
server/pycommon/gmScriptingListener.py | 2 +-
server/pycommon/gmShellAPI.py | 23 +-
server/pycommon/gmTools.py | 751 +-
.../sql/country.specific/au/gmDemographics.au.sql | 65 -
.../country.specific/ca/gmDemographics-Data.ca.sql | 33 +-
server/sql/country.specific/de/Impfplan-FSME.sql | 27 +-
.../sql/country.specific/de/Impfplan-Influenza.sql | 45 -
.../sql/country.specific/de/Impfplan-Prevenar.sql | 44 +-
server/sql/country.specific/de/Impfplan-Typhus.sql | 12 -
server/sql/country.specific/de/Impfstoffe.sql | 105 +-
server/sql/country.specific/de/PLZ.sql | 84 +-
.../sql/country.specific/de/STIKO-Impfkalender.sql | 88 +-
.../de/amis-import_data_template.sql | 26 -
server/sql/country.specific/de/gmATC.sql | 69 +-
.../sql/country.specific/de/gmDemographics.de.sql | 56 +-
server/sql/country.specific/de/gmDiagnosen.sql | 44 +-
server/sql/country.specific/de/gmUebersetzung.sql | 83 +-
server/sql/country.specific/de/gmVornamen.sql | 126 +-
.../country.specific/es/gmDemographics-Data.es.sql | 62 +-
server/sql/gmClinicalData.sql | 160 +-
server/sql/gmCountryZones.sql | 33 +-
server/sql/test-data/test_data-James_Kirk.sql | 287 -
.../test_data-Kirk_hospital_stay-dynamic.sql | 21 -
server/sql/v14-v15/python/v15-import-atc.py | 5 +-
.../v19-v20/dynamic/v20-release_notes-dynamic.sql | 14 +-
.../fixups/v20-clin-procedure-fixup.sql} | 17 +-
.../data/v21-Begleitbrief.tex} | 8 +-
.../v21-Medikationsplan_AMTS-2.0-nicht_konform.tex | 383 +
.../v20-v21/data/v21-Medikationsplan_AMTS-2.0.tex | 381 +
.../data/v21-aktuelle-Medikationsliste.tex} | 45 +-
.../sql/v20-v21/data/v21-gm2gpl-plot_one_test.gpl | 59 +
.../sql/v20-v21/data/v21-gm2gpl-plot_two_tests.gpl | 73 +
server/sql/v20-v21/dynamic/v21-HIT_risk.sql | 65 +
.../sql/v20-v21/dynamic/v21-audit-constraints.sql | 117 +
.../v20-v21/dynamic/v21-blobs-doc_med-dynamic.sql | 92 +
.../dynamic/v21-blobs-v_doc_desc.sql} | 22 +-
.../dynamic/v21-blobs-v_doc_med_journal.sql | 93 +
.../dynamic/v21-blobs-v_latest_mugshot.sql} | 20 +-
.../dynamic/v21-blobs-v_obj4doc_no_data.sql} | 76 +-
.../dynamic/v21-blobs-v_reviewed_doc_objects.sql} | 22 +-
.../dynamic/v21-cfg-cfg_str_array-dynamic.sql} | 6 +-
.../v20-v21/dynamic/v21-clin-procedure-dynamic.sql | 54 +
.../sql/v20-v21/dynamic/v21-clin-sanity_checks.sql | 122 +
.../dynamic/v21-clin-substance_intake-dynamic.sql | 337 +
.../sql/v20-v21/dynamic/v21-clin-v_edc_journal.sql | 90 +
.../dynamic/v21-clin-v_emr_journal.sql} | 19 +-
.../dynamic/v21-clin-v_export_items.sql} | 6 +-
.../dynamic/v21-clin-v_external_care_journal.sql | 90 +
.../dynamic/v21-clin-v_family_history_journal.sql} | 52 +-
.../dynamic/v21-clin-v_health_issues_journal.sql | 123 +
.../dynamic/v21-clin-v_hospital_stays_journal.sql | 352 +
.../dynamic/v21-clin-v_narrative4search.sql} | 27 +-
.../dynamic/v21-clin-v_pat_allergies_journal.sql | 90 +
.../v21-clin-v_pat_allergy_state_journal.sql | 191 +
.../dynamic/v21-clin-v_pat_encounters_journal.sql | 122 +
.../dynamic/v21-clin-v_pat_episodes_journal.sql | 107 +
.../dynamic/v21-clin-v_pat_narrative_journal.sql | 87 +
.../dynamic/v21-clin-v_procedures_journal.sql} | 115 +-
.../dynamic/v21-clin-v_reminders_journal.sql | 323 +
...21-clin-v_substance_intake4narrative_search.sql | 46 +
.../v21-clin-v_substance_intake_journal.sql | 258 +
.../dynamic/v21-clin-v_substance_intakes.sql} | 221 +-
.../dynamic/v21-clin-v_suppressed_hints.sql | 50 +
.../v21-clin-v_suppressed_hints_journal.sql | 98 +
.../dynamic/v21-clin-v_test_results_journal.sql} | 41 +-
.../dynamic/v21-clin-v_vaccinations_journal.sql | 116 +
.../dynamic/v21-clin-v_waiting_list.sql} | 63 +-
.../dynamic/v21-clin-vaccination-dynamic.sql | 196 +
.../dynamic/v21-dem-external_id-dynamic.sql} | 4 +-
.../v20-v21/dynamic/v21-dem-identity-dynamic.sql | 146 +
.../dynamic/v21-dem-org-trgm_idx.sql} | 2 +-
.../sql/v20-v21/dynamic/v21-dem-person_views.sql | 135 +
.../sql/v20-v21/dynamic/v21-dem-region-dynamic.sql | 634 +
.../sql/v20-v21/dynamic/v21-dem-staff-dynamic.sql | 141 +
.../sql/v20-v21/dynamic/v21-dem-v_basic_person.sql | 27 +
.../v20-v21/dynamic/v21-dem-v_pat_addresses.sql | 76 +
.../dynamic/v21-gm-db-translations-de_DE.sql | 434 +
server/sql/v20-v21/dynamic/v21-gm-md5.sql | 57 +
.../dynamic/v21-ref-paperwork_templates.sql | 138 +
.../sql/v20-v21/dynamic/v21-ref-v_auto_hints.sql | 405 +
.../v20-v21/dynamic/v21-release_notes-dynamic.sql | 114 +
.../gm_db-gnumed_v21-fingerprint.txt} | 134 +-
.../v20-v21/python/v21-import-form-templates.py | 64 +
.../python/v21-import-plot-scripts.py} | 8 +-
.../static/v21-blobs-doc_med-static.sql} | 7 +-
.../static/v21-clin-substance_intake-static.sql} | 15 +-
.../static/v21-dem-identity-static.sql} | 20 +-
.../static/v21-dem-region-static.sql} | 17 +-
.../static/v21-ref-auto_hint-static.sql} | 11 +-
.../superuser/v21-reinstall-pg_trgm.sql} | 2 +-
136 files changed, 54152 insertions(+), 27602 deletions(-)
copy server/bootstrap/{fixup_db-v20.conf => fixup_db-v21.conf} (76%)
create mode 100644 server/bootstrap/update_db-v20_v21.conf
copy server/doc/{gm-backup_database.8 => gm-backup.8} (58%)
create mode 100644 server/doc/gm-restore_database_from_archive.8
rename server/etc/gnumed/{gnumed-restore.conf.example => gnumed-restore.conf} (72%)
copy server/{gm-backup_database.sh => gm-backup.sh} (86%)
copy server/{gm-restore_database.sh => gm-restore_database_from_archive.sh} (60%)
delete mode 100644 server/pycommon/gmConfigCommon.py
copy server/sql/{v17-v18/static/v18-bill-bill-static.sql => v19-v20/fixups/v20-clin-procedure-fixup.sql} (66%)
copy server/sql/{v19-v20/data/v20-Begleitbrief.tex => v20-v21/data/v21-Begleitbrief.tex} (95%)
create mode 100644 server/sql/v20-v21/data/v21-Medikationsplan_AMTS-2.0-nicht_konform.tex
create mode 100644 server/sql/v20-v21/data/v21-Medikationsplan_AMTS-2.0.tex
copy server/sql/{v18-v19/data/v19-GNUmed-default_medication_list_template.tex => v20-v21/data/v21-aktuelle-Medikationsliste.tex} (72%)
create mode 100644 server/sql/v20-v21/data/v21-gm2gpl-plot_one_test.gpl
create mode 100644 server/sql/v20-v21/data/v21-gm2gpl-plot_two_tests.gpl
create mode 100644 server/sql/v20-v21/dynamic/v21-HIT_risk.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-audit-constraints.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-blobs-doc_med-dynamic.sql
copy server/sql/{v9-v10/dynamic/v10-blobs-v_doc_desc.sql => v20-v21/dynamic/v21-blobs-v_doc_desc.sql} (57%)
create mode 100644 server/sql/v20-v21/dynamic/v21-blobs-v_doc_med_journal.sql
copy server/sql/{v9-v10/dynamic/v10-blobs-v_latest_mugshot.sql => v20-v21/dynamic/v21-blobs-v_latest_mugshot.sql} (70%)
copy server/sql/{v9-v10/dynamic/v10-blobs-v_obj4doc_no_data.sql => v20-v21/dynamic/v21-blobs-v_obj4doc_no_data.sql} (50%)
copy server/sql/{v9-v10/dynamic/v10-blobs-v_reviewed_doc_objects.sql => v20-v21/dynamic/v21-blobs-v_reviewed_doc_objects.sql} (71%)
copy server/sql/{v19-v20/dynamic/v20-cfg-cfg_str_array-dynamic.sql => v20-v21/dynamic/v21-cfg-cfg_str_array-dynamic.sql} (67%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-procedure-dynamic.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-sanity_checks.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-substance_intake-dynamic.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_edc_journal.sql
copy server/sql/{v19-v20/dynamic/v20-clin-v_emr_journal.sql => v20-v21/dynamic/v21-clin-v_emr_journal.sql} (81%)
copy server/sql/{v19-v20/dynamic/v20-clin-v_export_items.sql => v20-v21/dynamic/v21-clin-v_export_items.sql} (89%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_external_care_journal.sql
copy server/sql/{v15-v16/dynamic/v16-clin-v_family_history_journal.sql => v20-v21/dynamic/v21-clin-v_family_history_journal.sql} (65%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_health_issues_journal.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_hospital_stays_journal.sql
copy server/sql/{v19-v20/dynamic/v20-clin-v_narrative4search.sql => v20-v21/dynamic/v21-clin-v_narrative4search.sql} (93%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_pat_allergies_journal.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_pat_allergy_state_journal.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_pat_encounters_journal.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_pat_episodes_journal.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_pat_narrative_journal.sql
copy server/sql/{v18-v19/dynamic/v19-clin-v_procedures_journal.sql => v20-v21/dynamic/v21-clin-v_procedures_journal.sql} (60%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_reminders_journal.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_substance_intake4narrative_search.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_substance_intake_journal.sql
copy server/sql/{v18-v19/dynamic/v19-clin-v_substance_intakes.sql => v20-v21/dynamic/v21-clin-v_substance_intakes.sql} (51%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_suppressed_hints.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_suppressed_hints_journal.sql
copy server/sql/{v19-v20/dynamic/v20-clin-v_test_results_journal.sql => v20-v21/dynamic/v21-clin-v_test_results_journal.sql} (72%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-v_vaccinations_journal.sql
copy server/sql/{v15-v16/fixups/v16-clin-v_waiting_list-fixup.sql => v20-v21/dynamic/v21-clin-v_waiting_list.sql} (55%)
create mode 100644 server/sql/v20-v21/dynamic/v21-clin-vaccination-dynamic.sql
copy server/sql/{v17-v18/static/v18-clin-lnk_ttype2unified_type-static.sql => v20-v21/dynamic/v21-dem-external_id-dynamic.sql} (75%)
create mode 100644 server/sql/v20-v21/dynamic/v21-dem-identity-dynamic.sql
copy server/sql/{v19-v20/fixups/v20-dem-org-idx-fixup.sql => v20-v21/dynamic/v21-dem-org-trgm_idx.sql} (92%)
create mode 100644 server/sql/v20-v21/dynamic/v21-dem-person_views.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-dem-region-dynamic.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-dem-staff-dynamic.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-dem-v_basic_person.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-dem-v_pat_addresses.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-gm-db-translations-de_DE.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-gm-md5.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-ref-paperwork_templates.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-ref-v_auto_hints.sql
create mode 100644 server/sql/v20-v21/dynamic/v21-release_notes-dynamic.sql
copy server/sql/{v19-v20/gm_db-gnumed_v20-fingerprint.txt => v20-v21/gm_db-gnumed_v21-fingerprint.txt} (86%)
create mode 100644 server/sql/v20-v21/python/v21-import-form-templates.py
copy server/sql/{v15-v16/python/v16-import-plot-scripts.py => v20-v21/python/v21-import-plot-scripts.py} (78%)
copy server/sql/{v18-v19/static/v19-clin-hospital_stay-static.sql => v20-v21/static/v21-blobs-doc_med-static.sql} (72%)
copy server/sql/{v17-v18/static/v18-dem-staff-static.sql => v20-v21/static/v21-clin-substance_intake-static.sql} (55%)
copy server/sql/{v17-v18/static/v18-dem-staff-static.sql => v20-v21/static/v21-dem-identity-static.sql} (57%)
copy server/sql/{v17-v18/static/v18-dem-staff-static.sql => v20-v21/static/v21-dem-region-static.sql} (57%)
copy server/sql/{v17-v18/static/v18-bill-bill-static.sql => v20-v21/static/v21-ref-auto_hint-static.sql} (67%)
copy server/sql/{v18-v19/superuser/v19-install-pg_trgm.sql => v20-v21/superuser/v21-reinstall-pg_trgm.sql} (90%)
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