[med-svn] [seaview] annotated tag upstream/4.5.4.8 created (now 4efc589)

Andreas Tille tille at debian.org
Sat Mar 19 22:52:59 UTC 2016


This is an automated email from the git hooks/post-receive script.

tille pushed a change to annotated tag upstream/4.5.4.8
in repository seaview.

        at  4efc589   (tag)
   tagging  aecbeb8ed79244456a9ca2429851c3aac1d7bc41 (commit)
 tagged by  Andreas Tille
        on  Sat Mar 19 23:47:53 2016 +0100

- Log -----------------------------------------------------------------
Upstream version 4.5.4.8

Andreas Tille (25):
      Standards-Version: 3.8.3, s/Debian-Med/Debian Med/
      New upstream version, Source format 3.0 (quilt), minor fixes
      New upstream version
      Fix format security patch
      Drop cdbs build-depends by switching to dh; rename examples directory; apply patch to really enable hardening flags
      Information about alternative to patch upstream Makefile; do not force hardening
      Keep old information from tasks file as additional citation
      Enhance information taken over from tasks file
      New upstream version; cme fix dpkg-control
      anonscm
      Patch for missing -ldl; Upload to unstable
      New upstream version
      cme fix dpkg-control
      New upstream version that can go to main since third party code from PHYLIP is now free
      cme fix dpkg-control
      Fix license according to the PHYLIP license
      Copyright as uploaded
      New upstream bugfix release, Architecture any
      New version does not build, problem forwarded upstream
      New upstream version (requiring some patches)
      New upstream version
      New upstream version
      Upload new upstream version
      Rebuild using -fPIC
      Imported Upstream version 4.5.4.8

Charles Plessy (113):
      [svn-inject] Installing original source of seaview
      [svn-inject] Forking seaview source to Trunk
      Load seaview-20021127 into trunk/packages/seaview/trunk.
      updated meta-informations and debian/rules
      =New icon ; removed inactive maintainer
      using x-termnial-emulator instead of xterm
      freedesktop menu support
      new upstream version
      uuencoding the source file for the icon of seaview
      work on freedesktop menu, manpage, default terminal for launching muscle, and help file
      missing dependancies and build rules, tidying
      Shame on me, an error in the maitainer adress.
      Improved the manpage, and added a "made in Debian" comment in the desktop file.
      Adding a watch file
      new upstream version
      removing [Biology] from the short description; expanding the PCR term.
      Declaring VCS in debian/control
      Factorisation of code by using /usr/share/dpatch/dpatch.make
      New upstream release. Took the opportunity to improve manpage
      New usptream release
      New usptream release
      Swiched to MergeWithUpstream, to save space
      swiching to quilt
      swiching to quilt
      swiching to quilt
      Menu transition, bibliographic reference, manpage update and mmisc-Depends.
      minor mistake when remaking the patch
      purging diff.gz
      New upstream release
      Moving Homepage: field out from the package description.
      [seaview] new upstream version
      Building manpage offline and updating Vcs fields.
      refreshed patches
      Hardcoding the path to seaview_align.sh.
      Bumping version number in manpage.
      New upstream release.
      hardcoding the location of seaview_align.sh
      Using xterm by default instead of x-terminal-emulator
      debian/control: downgrading some Recommends to Suggests
      +XS-DM-Upload-Allowed: Yes
      made machine readable
      associating .aln files with seaview through text/x-clustalw-alignment
      upgraded standards-version
      Suppressing chemical/mase, declaring that text/x-clustalw-alignment is a subtype of text/plain.
      typo… sorry…
      Fixing case mistake
      new upstream release
      Bumped copyrights to 2008
      reverted the changes so that Nelson can svn-tag
      Restored the copyrights bumps.
      Fixing debian/changelog gizmo
      Corrected typos and formatting.
      Updated my email address.
      Experimenting the handling of BibTex references.
      Preparing the release of 3.2, but a problem with a non-free file must be solved first.
      New 3.2 version using a different and free md5 source file.
      Annotated patches, and added README.source to comply with Policy 3.8.0.
      Added build-dependancy to libpng12-dev and zlib1g-dev, and uploaded.
      New upstream release.
      Ready for upload now that phyml is in Debian.
      Spellchecked changelog, tidied copyright file, fixed packaging bugs and… found non-free files :(
      Uploaded to non-free :(
      New upstream version adding nucleotide ambiguity symbols in consensus DNA sequences and adopting the manpages made in Debian.
      Uploaded.
      XS-Autobuild: yes
      New upstream release, with packaging changes reverting by mistake the last two commits.
      Restored changes deleted by accident.
      Corrected PubMed and Reference fields.
      New upstream release fixing a couple of bugs and having a new bibliographic reference.
      Removed old DOI.
      Added the Name field.
      New upstream release, and other packaging changes.
      New upstream version and minor packaging changes.
      New upstream release where the patch was applied.
      New upstream release (no change for license or copyrights).
      Started to validate with config-edit.
      Using Debhelper compatibility level 8 (debian/control, debian/compat).
      Clean extra files through dh_clean.
      Transient simplification of debian/rules
      Simplified build system using CDBS to pass options through CFLAGS.
      Uploaded seaview_4.2.12-1_amd64.changes after bumping Standards-Version.
      Validated and reformatted with config-edit.
      New usptream release, with no new copyright notice or license statement.
      New upstream release; explicit build-depend on libjpeg62-dev; build on armel.
      Deleted patches applied upstream.
      New upstream release.  No new license nor copyright.
      Moved help file to /usr/share/seaview and left a symbolic link.
      Uploaded a couple of hours ago.
      Renamed debian/upstream-metadata.yaml to debian/upstream.
      New upstream release (no new copyright or license notice).
      Include upstream example in Nexus format.
      seaview (1:4.3.3-1) unstable; urgency=low
      Corrected the files that did not validate with YAML::XS.
      Build on libpng-dev instead of libpng12-dev.
      Harden through Debhelper's compatibility level 9.
      seaview (1:4.3.3-2) unstable; urgency=low
      New upstream release, where third-party files were removed.
      Removed parts of the hardening patch which were adopted upstream.
      Recommend Clustal Omega instead of Clustal W.
      Removed my claim of copyright.
      Removed changelog lines obsoleted by the new upstream release.
      seaview (1:4.4.0-1) unstable; urgency=low
      New upstream release, with no new license nor copyright statement.
      Removed ldl patch applied upstream.
      Build-depend on libjpeg8-dev instead of libjpeg62-dev.
      debian/seaview.mime: removed (redundant with FreeDesktop entry).
      seaview (1:4.5.1-1) unstable; urgency=medium
      New upstream version; updated machine-readable copyright file.
      New homepage.
      Removed redundant Debhelper file.
      seaview (1:4.5.2-1) unstable; urgency=medium
      seaview (1:4.5.3.1-2) unstable; urgency=medium
      Drop menu file as per decision of the Technical Committee.

David Paleino (1):
      * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed

James McCoy (1):
      Move debian/upstream to debian/upstream/metadata

Nelson A. de Oliveira (4):
      Removing deprecated Encoding entries
      It's the watch file party! :-D
      Uploaded
      Fix typos

Steffen Moeller (2):
      I am a bit uncertain at the moment what all my changes exactly
      Added patch by Stefano Rivera for compatibility

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