[med-svn] r21577 - in trunk/packages/R: . r-cran-treescape r-cran-treescape/trunk r-cran-treescape/trunk/debian r-cran-treescape/trunk/debian/source r-cran-treescape/trunk/debian/tests
Andreas Tille
tille at moszumanska.debian.org
Wed Mar 23 10:44:21 UTC 2016
Author: tille
Date: 2016-03-23 10:44:21 +0000 (Wed, 23 Mar 2016)
New Revision: 21577
Added:
trunk/packages/R/r-cran-treescape/
trunk/packages/R/r-cran-treescape/trunk/
trunk/packages/R/r-cran-treescape/trunk/debian/
trunk/packages/R/r-cran-treescape/trunk/debian/README.test
trunk/packages/R/r-cran-treescape/trunk/debian/changelog
trunk/packages/R/r-cran-treescape/trunk/debian/compat
trunk/packages/R/r-cran-treescape/trunk/debian/control
trunk/packages/R/r-cran-treescape/trunk/debian/copyright
trunk/packages/R/r-cran-treescape/trunk/debian/docs
trunk/packages/R/r-cran-treescape/trunk/debian/rules
trunk/packages/R/r-cran-treescape/trunk/debian/source/
trunk/packages/R/r-cran-treescape/trunk/debian/source/format
trunk/packages/R/r-cran-treescape/trunk/debian/tests/
trunk/packages/R/r-cran-treescape/trunk/debian/tests/control
trunk/packages/R/r-cran-treescape/trunk/debian/tests/run-unit-test
trunk/packages/R/r-cran-treescape/trunk/debian/watch
Log:
INject r-cran-treescape
Added: trunk/packages/R/r-cran-treescape/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/README.test (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/README.test 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+cd tests
+LC_ALL=C R --no-save < testthat.R
+
+in order to confirm its integrity.
Added: trunk/packages/R/r-cran-treescape/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/changelog 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,6 @@
+r-cran-treescape (1.8.15-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #<bug>)
+ TODO: Several predependencies missing
+
+ -- Andreas Tille <tille at debian.org> Tue, 22 Mar 2016 12:05:59 +0100
Added: trunk/packages/R/r-cran-treescape/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/compat 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-cran-treescape/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/control 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,40 @@
+Source: r-cran-treescape
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-cran-ape,
+ r-cran-ade4,
+ r-cran-adephylo,
+ r-cran-shiny,
+ r-cran-adegenet,
+ r-cran-adegraphics,
+ r-cran-combinat,
+ r-cran-phangorn,
+ r-cran-rcpp
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-treescape/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-treescape/trunk/
+Homepage: https://cran.r-project.org/web/packages/treescape/
+
+Package: r-cran-treescape
+Architecture: any
+Depends: ${misc:Depends},
+ ${shlibs:Depends},
+ ${R:Depends}
+ r-cran-ape,
+ r-cran-ade4,
+ r-cran-adephylo,
+ r-cran-shiny,
+ r-cran-adegenet,
+ r-cran-adegraphics,
+ r-cran-combinat,
+ r-cran-phangorn,
+ r-cran-rcpp
+Description: GNU R Statistical Exploration of Landscapes of Phylogenetic Trees
+ This GNU R package provides tools for the exploration of distributions
+ of phylogenetic trees. This package includes a shiny interface which can
+ be started from R using 'treescapeServer()'.
Added: trunk/packages/R/r-cran-treescape/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/copyright 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Michelle Kendall <m.kendall at imperial.ac.uk>
+Source: https://cran.r-project.org/web/packages/treescape/
+
+Files: *
+Copyright: 2009-2015 Thibaut Jombart, Michelle Kendall, Jacob Almagro-Garcia, Caroline Colijn
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: GPL-2+
Added: trunk/packages/R/r-cran-treescape/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/docs (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/docs 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test
Added: trunk/packages/R/r-cran-treescape/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/rules 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-cran-treescape/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-cran-treescape/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/source/format 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-cran-treescape/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/tests/control (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/tests/control 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr
Added: trunk/packages/R/r-cran-treescape/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/tests/run-unit-test (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/tests/run-unit-test 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,12 @@
+#!/bin/sh -e
+
+oname=treescape
+pkg=r-cran-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+LC_ALL=C R --no-save < testthat.R
+rm -fr $ADTTMP/*
Added: trunk/packages/R/r-cran-treescape/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-treescape/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-cran-treescape/trunk/debian/watch 2016-03-23 10:44:21 UTC (rev 21577)
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/treescape_([-0-9\.]*).tar.gz
+
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