[med-svn] [augustus] 01/01: add more man pages

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

sascha-guest pushed a commit to branch master
in repository augustus.

commit 26033d5c62fcf4ac665f683e6d46a818a25570d6
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Thu Mar 24 11:51:53 2016 +0000

    add more man pages
---
 debian/mansrc/aln2wig.1.adoc         | 29 ++++++++++++++++++++++
 debian/mansrc/consensusFinder.1.adoc | 47 ++++++++++++++++++++++++++++++++++++
 2 files changed, 76 insertions(+)

diff --git a/debian/mansrc/aln2wig.1.adoc b/debian/mansrc/aln2wig.1.adoc
new file mode 100644
index 0000000..42d5059
--- /dev/null
+++ b/debian/mansrc/aln2wig.1.adoc
@@ -0,0 +1,29 @@
+# aln2wig(1)
+
+## NAME
+
+aln2wig - convert alignments to wig files
+
+## SYNOPSIS
+
+*aln2wig* [parameters] -f filename
+
+## OPTIONS
+
+*-f*::
+  Input filename (in psl or shrimp format)
+
+*-s*::
+  Use span notation
+
+*-t*::
+  Name of the track
+
+## AUTHORS
+
+AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.
+
+## ADDITIONAL DOCUMENTATION
+
+An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.
+
diff --git a/debian/mansrc/consensusFinder.1.adoc b/debian/mansrc/consensusFinder.1.adoc
new file mode 100644
index 0000000..6610fd4
--- /dev/null
+++ b/debian/mansrc/consensusFinder.1.adoc
@@ -0,0 +1,47 @@
+# consensusFinder(1)
+
+## NAME
+
+consensusFinder - consensus finder
+
+## SYNOPSIS
+
+*consensusFinder* input_fasta_file [options]
+
+## OPTIONS
+
+*-l*::
+  pattern length
+
+*-p*::
+  p-value for finding the significant strings
+
+*-d*::
+  delta to find the relevant strings
+
+*-s*::
+  starting position
+
+*-e*::
+  ending position
+
+*-m*::
+  no. of mismatches to consider while finding neighbours
+
+*-c*::
+  string to consider for analysis
+
+*-n*::
+  specify the number of consensus patterns to store
+
+*-t*::
+  print the histogram
+
+## AUTHORS
+
+AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.
+
+## ADDITIONAL DOCUMENTATION
+
+An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.
+

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/augustus.git