[med-svn] [plip] 05/14: Merge tag 'upstream/1.3.0a+dfsg'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository plip.

commit 343a5d0c62393e19e9224f477d971e5900a4f950
Merge: b323b47 4279f15
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed Mar 23 14:41:25 2016 +0100

    Merge tag 'upstream/1.3.0a+dfsg'
    
    Upstream version 1.3.0a+dfsg

 .gitignore                             |     1 +
 CHANGES.txt                            |    54 +-
 DOCUMENTATION.md                       |   224 +-
 README.md                              |     8 +-
 plip/__init__.py                       |    18 +-
 plip/modules/__init__.py               |    18 +-
 plip/modules/config.py                 |    44 +-
 plip/modules/detection.py              |   240 +-
 plip/modules/mp.py                     |    69 +
 plip/modules/preparation.py            |  1015 +-
 plip/modules/report.py                 |   210 +-
 plip/modules/supplemental.py           |   455 +-
 plip/modules/visualize.py              |   371 +-
 plip/plipcmd                           |   308 +-
 plip/test/pdb/1acj.pdb                 |  4774 ----
 plip/test/pdb/1aku.pdb                 |  1765 --
 plip/test/pdb/1ay8.pdb                 |  6838 ------
 plip/test/pdb/1bju.pdb                 |  2217 --
 plip/test/pdb/1bma.pdb                 |  2569 ---
 plip/test/pdb/1eve.pdb                 |  5376 -----
 plip/test/pdb/1h2t.pdb                 |  7978 -------
 plip/test/pdb/1hii.pdb                 |  2163 --
 plip/test/pdb/1hvi.pdb                 |  2409 --
 plip/test/pdb/1hwu.pdb                 |  5032 -----
 plip/test/pdb/1n7g.pdb                 | 12315 -----------
 plip/test/pdb/1osn.pdb                 | 11018 ----------
 plip/test/pdb/1p5e.pdb                 |  9844 ---------
 plip/test/pdb/1vsn.pdb                 |  2355 --
 plip/test/pdb/1xdn.pdb                 |  5703 -----
 plip/test/pdb/2efj.pdb                 |  3525 ---
 plip/test/pdb/2iuz.pdb                 |  8056 -------
 plip/test/pdb/2reg.pdb                 |  5374 -----
 plip/test/pdb/2w0s.pdb                 |  3928 ----
 plip/test/pdb/2zoz.pdb                 |  3856 ----
 plip/test/pdb/3o1h.pdb                 |  5090 -----
 plip/test/pdb/3og7.pdb                 |  8757 --------
 plip/test/pdb/3pxf.pdb                 |  3215 ---
 plip/test/pdb/3r0t.pdb                 |  6723 ------
 plip/test/pdb/3shy.pdb                 |  2872 ---
 plip/test/pdb/3tah.pdb                 |  5381 -----
 plip/test/pdb/3thy.pdb                 | 30958 --------------------------
 plip/test/pdb/4agl.pdb                 |  4509 ----
 plip/test/pdb/4alw.pdb                 |  3305 ---
 plip/test/pdb/4kya.pdb                 | 36156 -------------------------------
 plip/test/pdb/4pjt.pdb                 | 22489 -------------------
 plip/test/pdb/4qnb.pdb                 |  4070 ----
 plip/test/pdb/4rao.pdb                 | 14899 -------------
 plip/test/pdb/4rdl.pdb                 | 11637 ----------
 plip/test/test_basic_functions.py      |    60 +
 plip/test/test_literature_validated.py |   208 +-
 plip/test/test_metal_coordination.py   |   145 +
 plip/test/test_special_cases.py        |    13 +-
 setup.py                               |     6 +-
 53 files changed, 2576 insertions(+), 268047 deletions(-)

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